YRC Public Data Repository - Protein Structure Prediction

Protein:	ATIF1_RAT
Organism:	Rattus norvegicus
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATIF1_RAT.

Description	E-value	Query Range	Subject Range
ATIF1_MOUSE, IAT... - (O35143) ATPase inhibitor, mitochondrial precursor, ATPase inhibitor, mitochondrial OS=Mus musculus ...	140.0	[0..1]	[105..1]
ATPIF1 - ATPase inhibitory factor 1 gi\|60654607, gi\|... - gi\|60654609\|gb\|AAX31869.1\| ATPase inhibitory factor 1 [synthetic construct], gi\|60654607\|gb\|AAX31868... ATIF1_PONAB - ATPase inhibitor, mitochondrial OS=Pongo abelii GN=ATPIF1 PE=3 SV=1 ATIF1_PONPY - ATPase inhibitor, mitochondrial precursor - Pongo pygmaeus (Orangutan) gi\|55586611 - gi\|55586611\|ref\|XP_513253.1\| PREDICTED: ATPase inhibitory factor 1 [Pan troglodytes]	139.0	[0..1]	[106..1]
CCDS319.1_1 - null gi\|109000135 - gi\|109000135\|ref\|XP_001113002.1\| PREDICTED: ATPase inhibitory factor 1 [Macaca mulatta]	139.0	[0..1]	[106..1]
gi\|73950105, gi\|... - gi\|73950105\|ref\|XP_865710.1\| PREDICTED: similar to ATPase inhibitor, mitochondrial precursor isoform...	132.0	[0..1]	[106..1]
gi\|6978563, gi\|2... - ref\|NP_037047.1\| ATPase inhibitor [Rattus norvegicus], gi\|204682\|gb\|AAA41360.1\| IF1 protein	132.0	[0..10]	[107..10]
IATP_PIG, ATIF1_PIG - (Q29307) ATPase inhibitor, mitochondrial precursor, ATPase inhibitor, mitochondrial precursor - Sus ...	114.0	[0..1]	[106..1]
ATIF1_BOVIN - ATPase inhibitor, mitochondrial OS=Bos taurus GN=ATPIF1 PE=1 SV=2	113.0	[0..13]	[106..13]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSALAVRA RLGVWGMRVL QTRGFGSDSS ESMDSGAGSI REAGGAFGKR EKAEEDRYFR  60
   61 EKTREQLAAL KKHHEDEIDH HSKEIERLQK QIERHKKKIK YLKNSEH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	1gmjA
Description:	F1 ATPase inhibitor, IF1, C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits