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View Structure Prediction Details

Protein: gi|47480048, gi|...
Organism: Rattus norvegicus
Length: 207 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47480048, gi|....

Description E-value Query
Range
Subject
Range
gi|73976701 - gi|73976701|ref|XP_848612.1| PREDICTED: similar to claudin 19 (predicted) [Canis familiaris]
214.0 [0..1] [207..92]
gi|54020932, gi|... - gi|54020932|ref|NP_001005709.1| claudin 3 [Xenopus (Silurana) tropicalis], gi|49523224|gb|AAH75291.1...
212.0 [0..2] [207..1]
gi|50924892, gi|... - gi|50924892|gb|AAH79722.1| MGC82990 protein [Xenopus laevis], gi|148227415|ref|NP_001087400.1| MGC82...
211.0 [0..2] [207..1]
gi|49333437 - gi|49333437|gb|AAT64057.1| claudin 3c [Takifugu rubripes]
211.0 [0..2] [207..1]
CLD1_MOUSE - Claudin-1 OS=Mus musculus GN=Cldn1 PE=1 SV=1
205.0 [0..1] [207..1]
CLD1_RAT - Claudin-1 OS=Rattus norvegicus GN=Cldn1 PE=1 SV=2
204.0 [0..1] [207..1]

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Predicted Domain #1
Region A:
Residues: [1-207]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVATCLQVVG FVTSFVGWIG IIVTTSTNDW VVTCSYTIPT CRKMDELGSK GLWADCVMAT  60
   61 GLYHCKPLVD ILILPGYVQA CRALMIAASV LGLPAILLLL TVLPCIRMGH EPGVAKYRRA 120
  121 QLAGVLLILL ALCAIVATIW FPVCAHREIT IVSFGYSLYA GWIGAVMCLV GGCVIVCCSG 180
  181 DAQSFGENRF YYSSGSSSPT HAKSAHV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 12.60206
Match: PF00822.11
Description: No description for PF00822.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle