YRC Public Data Repository - Protein Structure Prediction

Protein:	CCL2_RAT
Organism:	Rattus norvegicus
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCL2_RAT.

Description	E-value	Query Range	Subject Range
gi\|27228299 - gi\|27228299\|gb\|AAN85636.1\| monocyte chemoattractant protein-1 [Sigmodon hispidus]	139.0	[0..1]	[148..1]
gi\|6531363 - gi\|6531363\|gb\|AAF15379.1\|AF065929_1 small inducible cytokine A2 precursor [Mus musculus]	128.0	[0..1]	[127..1]
gi\|164665382, gi... - gi\|57527998\|ref\|NP_001009579.1\| chemokine (C-C motif) ligand 3-like 1 [Sus scrofa], gi\|49354682\|gb\|A...	115.0	[0..1]	[94..1]
CCL4_BOVIN - C-C motif chemokine 4 OS=Bos taurus GN=CCL4 PE=3 SV=1	115.0	[0..1]	[93..1]
CCL4_MACMU - C-C motif chemokine 4 OS=Macaca mulatta GN=CCL4 PE=2 SV=1	115.0	[0..1]	[93..1]
CCL4_RAT - C-C motif chemokine 4 OS=Rattus norvegicus GN=Ccl4 PE=3 SV=1	114.0	[0..1]	[93..1]
gi\|55646301 - gi\|55646301\|ref\|XP_511774.1\| PREDICTED: chemokine (C-C motif) ligand 4-like 2 [Pan troglodytes]	114.0	[0..1]	[93..1]
CCL2_CAVPO - C-C motif chemokine 2 OS=Cavia porcellus GN=CCL2 PE=2 SV=1	113.0	[0..1]	[128..1]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVSVTLLGL LFTVAACSIH VLSQPDAVNA PLTCCYSFTG KMIPMSRLEN YKRITSSRCP  60
   61 KEAVVFVTKL KREICADPNK EWVQKYIRKL DQNQVRSETT VFYKIASTLR TSAPLNVNLT 120
  121 HKSEANASTL FSTTTSSTSV EVTSMTEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.30103
Match:	1bo0A
Description:	MONOCYTE CHEMOATTRACTANT PROTEIN-3, NMR, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits