YRC Public Data Repository - Protein Structure Prediction

Protein:	BET1_RAT
Organism:	Rattus norvegicus
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BET1_RAT.

Description	E-value	Query Range	Subject Range
BET1_MOUSE - BET1 homolog OS=Mus musculus GN=Bet1 PE=1 SV=1	109.0	[0..1]	[118..1]
gi\|57095986 - gi\|57095986\|ref\|XP_532463.1\| PREDICTED: similar to BET1 homolog (Golgi vesicular membrane traffickin...	107.0	[0..1]	[118..1]
gi\|109067483 - gi\|109067483\|ref\|XP_001098215.1\| PREDICTED: BET1 homolog (S. cerevisiae) isoform 3 [Macaca mulatta]	107.0	[0..1]	[118..1]
gi\|148877424, gi... - gi\|76670646\|ref\|XP_873653.1\| PREDICTED: similar to BET1 homolog (Golgi vesicular membrane traffickin...	106.0	[0..1]	[118..1]
gi\|55628902 - gi\|55628902\|ref\|XP_519206.1\| PREDICTED: similar to BET1 homolog (Golgi vesicular membrane traffickin... gi\|60654967, gi\|... - gi\|60654967\|gb\|AAX32047.1\| BET1-like [synthetic construct], gi\|60654965\|gb\|AAX32046.1\| BET1-like [sy... BET1 - blocked early in transport 1 homolog (S. cerevisiae)	106.0	[0..1]	[118..1]
gi\|60835318 - gi\|60835318\|gb\|AAX37133.1\| BET1-like [synthetic construct]	106.0	[0..1]	[118..1]
gi\|50732499 - gi\|50732499\|ref\|XP_418664.1\| PREDICTED: similar to Bet1 homolog [Gallus gallus]	102.0	[0..1]	[118..1]
gi\|47222240 - gi\|47222240\|emb\|CAG11119.1\| unnamed protein product [Tetraodon nigroviridis]	100.0	[0..1]	[118..18]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRAGLGDGA PPGGYGNYGY ANSGYNACEE ENDRLTESLR SKVTAIKSLS IEIGHEVKNQ  60
   61 NKLLAEMDSQ FDSTTGFLGK TMGRLKILSR GSQTKLLCYM MLFSLFVFFV IYWIIKLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.09691
Match:	1dn1B
Description:	Syntaxin 1A N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits