YRC Public Data Repository - Protein Structure Prediction

Protein:	IPKB_RAT
Organism:	Rattus norvegicus
Length:	71 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IPKB_RAT.

Description	E-value	Query Range	Subject Range
gi\|56208533 - gi\|56208533\|emb\|CAI19688.1\| protein kinase (cAMP-dependent, catalytic) inhibitor gamma [Homo sapiens...	81.0	[0..1]	[51..1]
gi\|109479223, gi... - gi\|109479223\|ref\|XP_001075390.1\| PREDICTED: similar to cAMP-dependent protein kinase inhibitor gamma...	80.0	[0..1]	[66..1]
gi\|47229088 - gi\|47229088\|emb\|CAG03840.1\| unnamed protein product [Tetraodon nigroviridis]	77.0	[0..1]	[57..1]
gi\|4835897 - gi\|4835897\|gb\|AAD30289.1\|AF139056_1 cAMP-dependent protein kinase inhibitor [Gallus gallus]	77.0	[0..1]	[50..1]
gi\|82916369, gi\|... - gi\|94384555\|ref\|XP_981782.1\| PREDICTED: similar to cAMP-dependent protein kinase inhibitor gamma [Mu...	76.0	[0..1]	[67..1]
gi\|33317514 - gi\|33317514\|gb\|AAQ04718.1\| cAMP-dependent protein kinase inhibitor gamma [Sus scrofa]	76.0	[0..1]	[50..1]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDVESVISS FASSARAGRR NALPDIQSSL ATGGSPDLAL KLEALAVKED AKMKNEEKDQ  60
   61 GQPKKPLDED K

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.552842
Match:	PF02827.7
Description:	No description for PF02827.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.806	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits