YRC Public Data Repository - Protein Structure Prediction

Protein:	TIM10_RAT
Organism:	Rattus norvegicus
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIM10_RAT.

Description	E-value	Query Range	Subject Range
gi\|50766075 - gi\|50766075\|ref\|XP_422986.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 10 ho...	122.0	[0..1]	[90..118]
gi\|5107178, gi\|7... - gi\|74096149\|ref\|NP_001027735.1\| small zinc finger-like protein [Ciona intestinalis], gi\|5107178\|gb\|A...	113.0	[0..1]	[88..1]
gi\|57099561 - gi\|57099561\|ref\|XP_533175.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 10 ho...	109.0	[0..1]	[89..1]
gi\|7305575, gi\|5... - gi\|7305575\|ref\|NP_038927.1\| translocase of inner mitochondrial membrane 13 homolog a [Mus musculus],...	108.0	[0..1]	[90..1]
TIM10_BOVIN - Mitochondrial import inner membrane translocase subunit Tim10 OS=Bos taurus GN=TIMM10 PE=3 SV=1	108.0	[0..1]	[89..1]
TIM10_XENTR - Mitochondrial import inner membrane translocase subunit Tim10 OS=Xenopus tropicalis GN=timm10 PE=3 S...	105.0	[0..1]	[85..1]
TI10B_XENLA - Mitochondrial import inner membrane translocase subunit Tim10-B OS=Xenopus laevis GN=timm10-b PE=3 S...	105.0	[0..1]	[85..1]
gi\|47218441 - gi\|47218441\|emb\|CAG03713.1\| unnamed protein product [Tetraodon nigroviridis]	105.0	[0..1]	[88..1]
TIM10_DANRE - Mitochondrial import inner membrane translocase subunit Tim10 OS=Danio rerio GN=timm10 PE=3 SV=1	102.0	[0..1]	[88..1]
gi\|88192452, gi\|... - gi\|88192452\|pdb\|2BSK\|F Chain F, Crystal Structure Of The Tim9 Tim10 Hexameric Complex, gi\|88192450\|p...	102.0	[0..2]	[90..2]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPLRAQQLA AELEVEMMAD MYNRMTSACH RKCVPPHYKE AELSKGESVC LDRCVSKYLD  60
   61 IHERMGKKLT ELSMQDEELM KRVQQSSGPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	2bskB
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits