YRC Public Data Repository - Protein Structure Prediction

Protein:	S10A6_RAT
Organism:	Rattus norvegicus
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for S10A6_RAT.

Description	E-value	Query Range	Subject Range
gi\|50748592 - gi\|50748592\|ref\|XP_421316.1\| PREDICTED: similar to calmodulin 1; Calmodulin 1 (phosphorylase kinase,...	119.0	[0..1]	[80..583]
gi\|109016674 - gi\|109016674\|ref\|XP_001108718.1\| PREDICTED: similar to Protein S100-A11 (S100 calcium-binding protei...	116.0	[0..2]	[88..440]
gi\|94471603 - gi\|94471603\|gb\|ABF21069.1\| mitochondrial calcium sensor cameleon 4mtD3cpv [synthetic construct]	114.0	[0..1]	[80..434]
gi\|76612513 - gi\|76612513\|ref\|XP_595126.2\| PREDICTED: similar to Calgizzarin (S100 calcium-binding protein A11) (S...	113.0	[0..2]	[88..86]
gi\|113431910 - gi\|113431910\|emb\|CAJ90906.1\| s100 calcium binding protein [Salmo salar]	110.0	[0..1]	[89..26]
gi\|114677917 - gi\|114677917\|ref\|XP_512771.2\| PREDICTED: similar to calmodulin [Pan troglodytes]	108.0	[0..1]	[80..194]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACPLDQAIG LLVAIFHKYS GKEGDKHTLS KKELKELIQK ELTIGAKLQD AEIARLMDDL  60
   61 DRNKDQEVNF QEYVAFLGAL ALIYNEALK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	1k96A
Description:	Calcyclin (S100)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits