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View Structure Prediction Details

Protein: DEF4_RAT
Organism: Rattus norvegicus
Length: 93 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEF4_RAT.

Description E-value Query
Range
Subject
Range
DEF7_PANTR - Defensin-7 OS=Pan troglodytes GN=DEFA7 PE=3 SV=1
150.0 [0..1] [92..1]
gi|113420279 - gi|113420279|ref|XP_001127901.1| PREDICTED: similar to Neutrophil defensin 4 precursor (HNP-4) (HP-4...
148.0 [0..1] [92..271]
gi|109085553 - gi|109085553|ref|XP_001084121.1| PREDICTED: similar to Neutrophil defensin 4 precursor (HNP-4) (HP-4...
134.0 [0..4] [92..36]
gi|58429942, gi|... - gi|58429942|gb|AAW78346.1| defensin alpha 2 [Papio anubis], gi|162951916|ref|NP_001106114.1| alpha-d...
134.0 [0..1] [93..1]

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Predicted Domain #1
Region A:
Residues: [1-56]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLTLLITL LLLALHTQAE SPQERAKAAP DQDMVMEDQD IFISFGGYKG TVLQDA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.1
Match: 2jnaA
Description: No description for 2jnaA was found.

Predicted Domain #2
Region A:
Residues: [57-93]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVKAGQACYC RIGACVSGER LTGACGLNGR IYRLCCR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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