YRC Public Data Repository - Protein Structure Prediction

Protein:	DEF3A_RAT
Organism:	Rattus norvegicus
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEF3A_RAT.

Description	E-value	Query Range	Subject Range
DEF7_PANTR - Defensin-7 OS=Pan troglodytes GN=DEFA7 PE=3 SV=1	137.0	[0..1]	[87..1]
gi\|113420279 - gi\|113420279\|ref\|XP_001127901.1\| PREDICTED: similar to Neutrophil defensin 4 precursor (HNP-4) (HP-4...	136.0	[0..1]	[87..271]
gi\|109085553 - gi\|109085553\|ref\|XP_001084121.1\| PREDICTED: similar to Neutrophil defensin 4 precursor (HNP-4) (HP-4...	123.0	[0..4]	[87..36]
gi\|60810228 - gi\|60810228\|gb\|AAX36142.1\| defensin alpha 1 [synthetic construct]	119.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLTLLTTL LLLALHTQAE SPQGSTKEAP DEEQDISVFF GGDKGTALQD AAVKAGVTCS  60
   61 CRTSSCRFGE RLSGACRLNG RIYRLCC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits