YRC Public Data Repository - Protein Structure Prediction

Protein:	HBA_RAT
Organism:	Rattus norvegicus
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HBA_RAT.

Description	E-value	Query Range	Subject Range
HBA_CANLA - Hemoglobin subunit alpha OS=Canis latrans GN=HBA PE=1 SV=2	175.0	[0..1]	[142..1]
HBA_AILME - Hemoglobin subunit alpha OS=Ailuropoda melanoleuca GN=HBA PE=1 SV=2	174.0	[0..1]	[142..1]
HBA_AILFU - Hemoglobin subunit alpha OS=Ailurus fulgens GN=HBA PE=1 SV=2	174.0	[0..1]	[142..1]
HBA_CYNSP - Hemoglobin subunit alpha OS=Cynopterus sphinx GN=HBA PE=1 SV=1	172.0	[0..2]	[142..1]
HBA_CANLF - Hemoglobin subunit alpha OS=Canis lupus familiaris GN=HBA PE=1 SV=1	172.0	[0..2]	[142..1]
gi\|70191 - gi\|70191\|pir\|\|HADG2 hemoglobin alpha-II chain - dog HBA_CHRBR - Hemoglobin subunit alpha OS=Chrysocyon brachyurus GN=HBA PE=1 SV=1 gi\|116666788, gi... - gi\|116666788\|pdb\|2B7H\|C Chain C, Hemoglobin From Cerdocyon Thous, A Canidae From Brazil, At 2.2 Angs... HBA_CANLA - (P60530) Hemoglobin subunit alpha (Hemoglobin alpha chain) (Alpha-globin)	172.0	[0..2]	[142..1]
HBA_NASNA - Hemoglobin subunit alpha OS=Nasua nasua GN=HBA PE=1 SV=1 gi\|108153 - pir\|\|A39020 hemoglobin alpha chain - ring-tailed coati	172.0	[0..2]	[142..1]
HBA_URSMA - Hemoglobin subunit alpha OS=Ursus maritimus GN=HBA PE=1 SV=2 HBA_URSTH - Hemoglobin subunit alpha OS=Ursus thibetanus GN=HBA PE=1 SV=2 HBA_HELMA - Hemoglobin subunit alpha OS=Helarctos malayanus GN=HBA PE=1 SV=2	172.0	[0..1]	[142..1]
HBA_VULVU - Hemoglobin subunit alpha OS=Vulpes vulpes GN=HBA PE=1 SV=1	172.0	[0..2]	[142..1]
HBA_ALCAA - Hemoglobin subunit alpha OS=Alces alces alces GN=HBA PE=1 SV=2	172.0	[0..1]	[142..1]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLSADDKTN IKNCWGKIGG HGGEYGEEAL QRMFAAFPTT KTYFSHIDVS PGSAQVKAHG  60
   61 KKVADALAKA ADHVEDLPGA LSTLSDLHAH KLRVDPVNFK FLSHCLLVTL ACHHPGDFTP 120
  121 AMHASLDKFL ASVSTVLTSK YR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.522879
Match:	1fhjA
Description:	Hemoglobin, alpha-chain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits