YRC Public Data Repository - Protein Structure Prediction

Protein:	UCN2_RAT
Organism:	Rattus norvegicus
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UCN2_RAT.

Description	E-value	Query Range	Subject Range
gi\|115494920, gi... - gi\|115494920\|ref\|NP_001069998.1\| urocortin 2 [Bos taurus], gi\|114050533\|dbj\|BAF30968.1\| urocortin 2 ...	156.0	[0..1]	[109..1]
UCN2_MOUSE - Urocortin-2 OS=Mus musculus GN=Ucn2 PE=2 SV=1	141.0	[0..1]	[109..1]
gi\|109039977 - gi\|109039977\|ref\|XP_001097967.1\| PREDICTED: similar to urocortin 2 preproprotein [Macaca mulatta]	133.0	[0..1]	[109..53]
UCN2 - urocortin 2 gi\|123995193, gi... - gi\|123995193\|gb\|ABM85198.1\| urocortin 2 [synthetic construct], gi\|123980374\|gb\|ABM82016.1\| urocortin...	123.0	[0..1]	[108..1]
gi\|159155889, gi... - gi\|94732536\|emb\|CAK05112.1\| novel protein similar to vertebrate urocortin 3 (stresscopin) (UCN3) [Da...	115.0	[0..23]	[109..47]
gi\|47207292 - gi\|47207292\|emb\|CAG07278.1\| unnamed protein product [Tetraodon nigroviridis]	109.0	[0..27]	[109..61]
gi\|122427915, gi... - gi\|62663790\|ref\|XP_574076.1\| PREDICTED: similar to Urocortin-3 precursor (Urocortin III) (Ucn III) [...	96.0	[0..52]	[109..106]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRWALVVFM VLMLDRVPGT PIPTFQLLPQ NYPETTPSSV SSESPSDTTT GPSASWSNSK  60
   61 ASPYLDTRVI LSLDVPIGLL RILLEQARNK AARNQAATNA QILARVGRR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.286	d.150.1	4'-phosphopantetheinyl transferase
View	Download	0.286	d.150.1	4'-phosphopantetheinyl transferase
View	Download	0.216	b.43.5	Riboflavin kinase

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits