YRC Public Data Repository - Protein Structure Prediction

Protein:	T10B_RAT
Organism:	Rattus norvegicus
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for T10B_RAT.

Description	E-value	Query Range	Subject Range
T10B_PONAB - Mitochondrial import inner membrane translocase subunit Tim10 B OS=Pongo abelii GN=TIMM10B PE=3 SV=1 TIM9B_PONPY - Mitochondrial import inner membrane translocase subunit Tim9 B - Pongo pygmaeus (Orangutan)	125.0	[0..8]	[100..10]
gi\|114635930 - gi\|114635930\|ref\|XP_001165925.1\| PREDICTED: similar to small zinc finger-like protein isoform 2 [Pan...	125.0	[0..8]	[100..11]
FXC1 - fracture callus 1 homolog (rat)	125.0	[0..8]	[100..11]
T10B_MOUSE - Mitochondrial import inner membrane translocase subunit Tim10 B OS=Mus musculus GN=Timm10b PE=1 SV=1	122.0	[0..1]	[100..1]
gi\|109107502 - gi\|109107502\|ref\|XP_001109886.1\| PREDICTED: similar to Mitochondrial import inner membrane transloca...	119.0	[0..8]	[100..10]
T10B_BOVIN - Mitochondrial import inner membrane translocase subunit Tim10 B OS=Bos taurus GN=TIMM10B PE=3 SV=1	117.0	[0..8]	[100..14]
gi\|109509651, gi... - gi\|62666314\|ref\|XP_574800.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	107.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHQQQQLRN LRDFLLVYNR MTELCFQRCV PSLHHRALDA EEEACLHSCA GKLIHSNHRL  60
   61 MAAYVHLMPA LVQRRMADYE AASAVPGVPA EQPRDSPSGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.39794
Match:	2bskA
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits