YRC Public Data Repository - Protein Structure Prediction

Protein:	1433F_RAT
Organism:	Rattus norvegicus
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for 1433F_RAT.

Description	E-value	Query Range	Subject Range
gi\|109087133 - gi\|109087133\|ref\|XP_001098275.1\| PREDICTED: similar to tyrosine 3/tryptophan 5 -monooxygenase activa...	431.0	[0..3]	[245..335]
gi\|68436321 - gi\|68436321\|ref\|XP_699659.1\| PREDICTED: similar to tyrosine 3-monooxygenase/tryptophan 5-monooxygena...	429.0	[0..3]	[245..1533]
gi\|114621209 - gi\|114621209\|ref\|XP_528202.2\| PREDICTED: similar to YWHAZ protein [Pan troglodytes]	414.0	[0..3]	[245..139]
gi\|30354619 - gi\|30354619\|gb\|AAH51814.1\| YWHAZ protein [Homo sapiens]	407.0	[0..3]	[245..77]
gi\|73967154 - gi\|73967154\|ref\|XP_537764.2\| PREDICTED: similar to 14-3-3 protein epsilon (14-3-3E) (Mitochondrial i...	406.0	[0..1]	[241..1]
gi\|74215924 - gi\|74215924\|dbj\|BAE28625.1\| unnamed protein product [Mus musculus]	404.0	[0..1]	[246..64]
gi\|60654187, gi\|... - gi\|61371807\|gb\|AAX43735.1\| tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein ep...	403.0	[0..1]	[245..1]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDREQLLQR ARLAEQAERY DDMASAMKAV TELNEPLSNE DRNLLSVAYK NVVGARRSSW  60
   61 RVISSIEQKT MADGNEKKLE KVKAYREKIE KELETVCNDV LALLDKFLIK NCNDFQYESK 120
  121 VFYLKMKGDY YRYLAEVASG EKKNSVVEAS EAAYKEAFEI SKEHMQPTHP IRLGLALNFS 180
  181 VFYYEIQNAP EQACLLAKQA FDDAIAELDT LNEDSYKDST LIMQLLRDNL TLWTSDQQDE 240
  241 EAGEGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	108.0
Match:	2c63A
Description:	14-3-3 Protein Eta (Human) Complexed to Peptide
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits