YRC Public Data Repository - Protein Structure Prediction

Protein:	4EBP1_RAT
Organism:	Rattus norvegicus
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for 4EBP1_RAT.

Description	E-value	Query Range	Subject Range
EIF4EBP2 - eukaryotic translation initiation factor 4E binding protein 2 gi\|55634971 - gi\|55634971\|ref\|XP_508163.1\| PREDICTED: similar to Eukaryotic translation initiation factor 4E bindi... ENSMMUT000000325... - null, null gi\|60656297, gi\|... - gi\|60656299\|gb\|AAX32713.1\| eukaryotic translation initiation factor 4E binding protein 2 [synthetic ...	171.0	[0..2]	[117..4]
gi\|31542600, gi\|... - gi\|31542600\|ref\|NP_031944.2\| eukaryotic translation initiation factor 4E binding protein 1 [Mus musc...	170.0	[0..1]	[117..1]
gi\|71682965, gi\|... - gi\|74271859\|ref\|NP_001028241.1\| eukaryotic translation initiation factor 4E binding protein 2 [Rattu...	170.0	[0..2]	[117..4]
gi\|60652549, gi\|... - gi\|60652549\|gb\|AAX28969.1\| eukaryotic translation initiation factor 4E binding protein 1 [synthetic ...	169.0	[0..1]	[117..1]
gi\|47223260 - gi\|47223260\|emb\|CAF98644.1\| unnamed protein product [Tetraodon nigroviridis]	168.0	[0..6]	[117..2]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAGSSCSQT PSRAIPTRRV ALGDGVQLPP GDYSTTPGGT LFSTTPGGTR IIYDRKFLME  60
   61 CRNSPVAKTP PKDLPTIPGV TSPTSDEPPM QASQSHLHSS PEDKRAGGEE SQFEMDI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.259637
Match:	PF05456.2
Description:	No description for PF05456.2 was found.

Shown below is our most confident prediction for this domain.
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Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits