YRC Public Data Repository - Protein Structure Prediction

Protein:	PLF4_RAT
Organism:	Rattus norvegicus
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLF4_RAT.

Description	E-value	Query Range	Subject Range
gi\|164665382, gi... - gi\|57527998\|ref\|NP_001009579.1\| chemokine (C-C motif) ligand 3-like 1 [Sus scrofa], gi\|49354682\|gb\|A...	106.0	[0..12]	[105..1]
gi\|28894125 - gi\|28894125\|gb\|AAO52735.1\| monocyte chemoattractant protein-3 [Macaca nemestrina]	105.0	[0..7]	[104..6]
gi\|55531 - gi\|55531\|emb\|CAA34901.1\| JE product [Rattus sp.] CCL2_RAT - C-C motif chemokine 2 OS=Rattus norvegicus GN=Ccl2 PE=2 SV=1	102.0	[0..12]	[105..1]
CCL4_MACMU - C-C motif chemokine 4 OS=Macaca mulatta GN=CCL4 PE=2 SV=1	101.0	[0..12]	[105..1]
CCL3L1, CCL3L3 - chemokine (C-C motif) ligand 3-like 3, chemokine (C-C motif) ligand 3-like 1	101.0	[0..12]	[105..1]
gi\|114671857 - gi\|114671857\|ref\|XP_001172226.1\| PREDICTED: similar to Small inducible cytokine A3-like 1 precursor ...	101.0	[0..13]	[105..42]
CCL4_BOVIN - C-C motif chemokine 4 OS=Bos taurus GN=CCL4 PE=3 SV=1	101.0	[0..12]	[105..1]
gi\|30584489, gi\|... - gi\|60653245\|gb\|AAX29317.1\| chemokine (C-C motif) ligand 3-like 1 [synthetic construct], gi\|60653243\|...	100.0	[0..12]	[105..1]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAAAVFRGL RPSPELLLLG LLLLPAVVAV TRASPEESDG DLSCVCVKTS SSRIHLKRIT  60
   61 SLEVIKAGPH CAVPQLIATL KNGSKICLDR QVPLYKKIIK KLLES

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	1f9pA
Description:	CRYSTAL STRUCTURE OF CONNECTIVE TISSUE ACTIVATING PEPTIDE-III(CTAP-III) COMPLEXED WITH POLYVINYLSULFONIC ACID
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits