YRC Public Data Repository - Protein Structure Prediction

Protein:	CRBB2_RAT
Organism:	Rattus norvegicus
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRBB2_RAT.

Description	E-value	Query Range	Subject Range
CRBB2_CANLF - Beta-crystallin B2 OS=Canis lupus familiaris GN=CRYBB2 PE=2 SV=1 tr\|M3WJG9\|M3WJG9... - Crystallin beta B2 OS=Felis catus GN=CRYBB2 PE=3 SV=1	298.0	[0..1]	[205..1]
gi\|109093638, gi... - gi\|171543855\|ref\|NP_001116366.1\| crystallin, beta B2 [Macaca mulatta], gi\|109093638\|ref\|XP_001098886...	296.0	[0..1]	[205..1]
CRBB2_BOVIN - Beta-crystallin B2 OS=Bos taurus GN=CRYBB2 PE=1 SV=3	296.0	[0..1]	[205..1]
CRYBB2 - crystallin, beta B2 gi\|109451692, gi... - gi\|109451692\|emb\|CAK54717.1\| CRYBB2 [synthetic construct], gi\|109451114\|emb\|CAK54418.1\| CRYBB2 [synt... ENSPTRT00000026499 - null	295.0	[0..1]	[205..1]
CRBB2_LITCT - Beta-crystallin B2 OS=Lithobates catesbeiana PE=2 SV=3	284.0	[0..1]	[205..1]
gi\|45184590, gi\|... - gi\|47551315\|ref\|NP_990506.2\| crystallin, beta B2 [Gallus gallus], gi\|45184590\|gb\|AAS55547.1\| beta B2...	283.0	[0..1]	[205..1]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASDHQTQAG KPQPLNPKII IFEQENFQGH SHELSGPCPN LKETGMEKAG SVLVQAGPWV  60
   61 GYEQANCKGE QFVFEKGEYP RWDSWTSSRR TDSLSSLRPI KVDSQEHKII LYENPNFTGK 120
  121 KMEIVDDDVP SFHAHGYQEK VSSVRVQSGT WVGYQYPGYR GLQYLLEKGD YKDNSDFGAP 180
  181 HPQVQSVRRI RDMQWHQRGA FHPSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.69897
Match:	1blbA
Description:	beta-Crystallin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of eye lens	3.95613127220698	bayes_pls_golite062009
binding	1.49962891213419	bayes_pls_golite062009
protein binding	0.439215717175215	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: