YRC Public Data Repository - Protein Structure Prediction

Protein:	CART_RAT
Organism:	Rattus norvegicus
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CART_RAT.

Description	E-value	Query Range	Subject Range
gi\|17644106 - gi\|17644106\|gb\|AAK57738.1\| cocaine and amphetamine regulated transcript type I protein [Carassius au...	185.0	[0..1]	[129..1]
CART_MOUSE - Cocaine- and amphetamine-regulated transcript protein OS=Mus musculus GN=Cartpt PE=1 SV=2	185.0	[0..1]	[129..1]
gi\|68364222 - gi\|68364222\|ref\|XP_685429.1\| PREDICTED: similar to cocaine and amphetamine regulated transcript prot...	181.0	[0..1]	[129..1]
gi\|114599766 - gi\|114599766\|ref\|XP_001155069.1\| PREDICTED: cocaine- and amphetamine-regulated transcript [Pan trogl...	169.0	[0..1]	[129..1]
CARTPT - CART prepropeptide gi\|61358568, gi\|... - gi\|61358568\|gb\|AAX41588.1\| cocaine- and amphetamine-regulated transcript [synthetic construct], gi\|6...	168.0	[0..1]	[129..1]
gi\|61368660, gi\|... - gi\|61368660\|gb\|AAX43217.1\| cocaine- and amphetamine-regulated transcript [synthetic construct], gi\|6...	168.0	[0..1]	[129..1]

Back

Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSRLRLLP VLGAALLLLL PLLGAGAQED AELQPRALDI YSAVDDASHE KELPRRQLRA  60
   61 PGAVLQIEAL QEVLKKLKSK RIPIYEKKYG QVPMCDAGEQ CAVRKGARIG KLCDCPRGTS 120
  121 CNSFLLKCL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	82.677781
Match:	PF06373.2
Description:	No description for PF06373.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.564	N/A	N/A	a.29.13	Description not found.
View	Download	0.525	N/A	N/A	a.29.13	Description not found.
View	Download	0.495	N/A	N/A	a.216.1	Description not found.
View	Download	0.474	N/A	N/A	a.24.26	Description not found.
View	Download	0.421	N/A	N/A	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.296	N/A	N/A	a.76.1	Iron-dependent represor protein, dimerization domain
View	Download	0.289	N/A	N/A	a.278.1	Description not found.
View	Download	0.289	N/A	N/A	d.80.1	Tautomerase/MIF
View	Download	0.289	N/A	N/A	d.80.1	Tautomerase/MIF
View	Download	0.261	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.256	N/A	N/A	f.14.1	Voltage-gated potassium channels
View	Download	0.215	N/A	N/A	a.7.1	Spectrin repeat

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits