YRC Public Data Repository - Protein Structure Prediction

Protein:	CCL11_RAT
Organism:	Rattus norvegicus
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCL11_RAT.

Description	E-value	Query Range	Subject Range
gi\|21070221, gi\|... - gi\|21070221\|gb\|AAM34214.1\|AF506972_1 mcp-2 [Equus caballus], gi\|126352332\|ref\|NP_001075333.1\| mcp-2 ...	107.0	[0..1]	[97..1]
gi\|28894125 - gi\|28894125\|gb\|AAO52735.1\| monocyte chemoattractant protein-3 [Macaca nemestrina]	106.0	[0..2]	[96..12]
gi\|15281829 - gi\|15281829\|gb\|AAK94451.1\|AF399641_1 chemoattractant protein 2 [Bos taurus]	105.0	[0..1]	[97..2]
CCL11_MOUSE - Eotaxin OS=Mus musculus GN=Ccl11 PE=2 SV=1	104.0	[0..1]	[97..1]
CCL4_MACMU - C-C motif chemokine 4 OS=Macaca mulatta GN=CCL4 PE=2 SV=1	103.0	[0..1]	[91..1]
CCL2_RABIT - C-C motif chemokine 2 OS=Oryctolagus cuniculus GN=CCL2 PE=2 SV=1	103.0	[0..1]	[96..1]
CCL4_RAT - C-C motif chemokine 4 OS=Rattus norvegicus GN=Ccl4 PE=3 SV=1	103.0	[0..1]	[91..1]
gi\|164665382, gi... - gi\|57527998\|ref\|NP_001009579.1\| chemokine (C-C motif) ligand 3-like 1 [Sus scrofa], gi\|49354682\|gb\|A...	103.0	[0..1]	[92..1]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLSTALLFL LLTATSFTSQ VLAHPGSIPT SCCFTMTSKK IPNTLLKSYK RITNNRCTLK  60
   61 AIVFKTKLGK EICADPKKKW VQDATKHLDQ KLQTPKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	1bo0A
Description:	MONOCYTE CHEMOATTRACTANT PROTEIN-3, NMR, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits