YRC Public Data Repository - Protein Structure Prediction

Protein:	CO5_RAT
Organism:	Rattus norvegicus
Length:	77 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CO5_RAT.

Description	E-value	Query Range	Subject Range
CO3_CAVPO - Complement C3 OS=Cavia porcellus GN=C3 PE=1 SV=2	124.0	[0..1]	[77..676]
gi\|109110418 - gi\|109110418\|ref\|XP_001095750.1\| PREDICTED: similar to complement component 5 [Macaca mulatta]	122.0	[0..3]	[77..677]
gi\|109469622 - gi\|109469622\|ref\|XP_001079130.1\| PREDICTED: similar to Complement C5 precursor (Hemolytic complement...	122.0	[0..1]	[77..679]
gi\|48675959, gi\|... - gi\|48675959\|ref\|NP_001001646.1\| complement component 5 [Sus scrofa], gi\|37677940\|gb\|AAQ97591.1\| comp...	120.0	[0..3]	[77..677]
C5 - complement component 5	118.0	[0..3]	[77..677]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLQLLHQKVE EQAAKYKHRV PKKCCYDGAR ENKYETCEQR VARVTIGPHC IRAFNECCTI  60
   61 ADKIRKESHH KGMLLGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	2b39A
Description:	No description for 2b39A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits