YRC Public Data Repository - Protein Structure Prediction

Protein:	TM14C_RAT
Organism:	Rattus norvegicus
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TM14C_RAT.

Description	E-value	Query Range	Subject Range
gi\|50744874 - gi\|50744874\|ref\|XP_419915.1\| PREDICTED: similar to RIKEN cDNA 5730496E24 [Gallus gallus]	129.0	[0..8]	[109..197]
gi\|57110218 - gi\|57110218\|ref\|XP_535885.1\| PREDICTED: similar to transmembrane protein 14C [Canis familiaris]	129.0	[0..1]	[114..1]
TM14C_MOUSE - Transmembrane protein 14C OS=Mus musculus GN=Tmem14c PE=1 SV=1	124.0	[0..1]	[114..1]
gi\|114605447, gi... - gi\|114605451\|ref\|XP_001167368.1\| PREDICTED: transmembrane protein 14C isoform 4 [Pan troglodytes], g... TMEM14C - transmembrane protein 14C gi\|123983879, gi... - gi\|123998203\|gb\|ABM86703.1\| transmembrane protein 14C [synthetic construct], gi\|123983879\|gb\|ABM8348...	121.0	[0..3]	[113..2]
gi\|109069605, gi... - gi\|109069605\|ref\|XP_001087822.1\| PREDICTED: transmembrane protein 14C isoform 2 [Macaca mulatta], gi...	120.0	[0..4]	[113..3]
TM14C_PONAB - Transmembrane protein 14C OS=Pongo abelii GN=TMEM14C PE=3 SV=1 gi\|55731390 - gi\|55731390\|emb\|CAH92409.1\| hypothetical protein [Pongo abelii]	120.0	[0..3]	[113..2]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKDSGPLVP LHYYGFGYAA LVATGGIIGY AKAGSVPSLA AGLFFGGLAG LGAYQLSQDP  60
   61 RNVWVFLATS GTLAGIMGMR FYNSGKFMPA GLIAGASLLM VAPGVAKIQE ITTMP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	42.070581
Match:	PF03647.4
Description:	No description for PF03647.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits