YRC Public Data Repository - Protein Structure Prediction

Protein:	TIM8A_RAT
Organism:	Rattus norvegicus
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIM8A_RAT.

Description	E-value	Query Range	Subject Range
gi\|76660354 - gi\|76660354\|ref\|XP_600831.2\| PREDICTED: similar to translocase of inner mitochondrial membrane 8 hom...	102.0	[0..11]	[97..12]
gi\|114689461, gi... - gi\|114689461\|ref\|XP_001139457.1\| PREDICTED: translocase of inner mitochondrial membrane 8 homolog A ... ENSCJAT00000009066 - null gi\|109131553 - gi\|109131553\|ref\|XP_001092722.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 8... TIMM8A - translocase of inner mitochondrial membrane 8 homolog A (yeast)	101.0	[0..1]	[97..1]
TI8AB_MOUSE - Putative mitochondrial import inner membrane translocase subunit Tim8 A-B OS=Mus musculus GN=Timm8a2...	101.0	[0..1]	[97..1]
TIM8A_BOVIN - Mitochondrial import inner membrane translocase subunit Tim8 A OS=Bos taurus GN=TIMM8A PE=3 SV=1 gi\|57112261 - gi\|57112261\|ref\|XP_538107.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 8 hom...	101.0	[0..1]	[97..1]
gi\|50766075 - gi\|50766075\|ref\|XP_422986.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 10 ho...	101.0	[0..13]	[95..116]
gi\|109072562 - gi\|109072562\|ref\|XP_001095067.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 8...	98.0	[0..2]	[97..44]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSSSSSGS ALAAVDPQLQ HFIEVETQKQ RFQQLVHQMT ELCWEKCMDK PGPKLDSRAE  60
   61 ACFVNCVERF IDTSQFILNR LEQTQKSKPV FSESLSD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.154902
Match:	2bskB
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits