YRC Public Data Repository - Protein Structure Prediction

Protein:	S10A4_RAT
Organism:	Rattus norvegicus
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for S10A4_RAT.

Description	E-value	Query Range	Subject Range
gi\|50761685 - gi\|50761685\|ref\|XP_429152.1\| PREDICTED: similar to S100Z protein [Gallus gallus]	124.0	[0..1]	[96..367]
gi\|109016674 - gi\|109016674\|ref\|XP_001108718.1\| PREDICTED: similar to Protein S100-A11 (S100 calcium-binding protei...	123.0	[0..2]	[99..440]
gi\|76612513 - gi\|76612513\|ref\|XP_595126.2\| PREDICTED: similar to Calgizzarin (S100 calcium-binding protein A11) (S...	119.0	[0..2]	[98..86]
gi\|34811430, gi\|... - gi\|34811430\|pdb\|1NSH\|B Chain B, Solution Structure Of Rabbit Apo-S100a11 (19 Models), gi\|34811429\|pd...	118.0	[0..2]	[99..3]
gi\|113431910 - gi\|113431910\|emb\|CAJ90906.1\| s100 calcium binding protein [Salmo salar]	117.0	[0..1]	[96..26]
gi\|114559755 - gi\|114559755\|ref\|XP_513820.2\| PREDICTED: S100 calcium binding protein A1 isoform 2 [Pan troglodytes]	115.0	[0..1]	[94..54]
gi\|56205585, gi\|... - gi\|56205585\|emb\|CAI19674.1\| S100 calcium binding protein A1 [Homo sapiens], gi\|119573686\|gb\|EAW53301...	114.0	[0..1]	[94..54]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARPLEEALD VIVSTFHKYS GNEGDKFKLN KTELKELLTR ELPSFLGRRT DEAAFQKLMN  60
   61 NLDSNRDNEV DFQEYCVFLS CIAMMCNEFF EGCPDKEPRK K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1m31A
Description:	Calcyclin (S100)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits