YRC Public Data Repository - Protein Structure Prediction

Protein:	CST11_RAT
Organism:	Rattus norvegicus
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CST11_RAT.

Description	E-value	Query Range	Subject Range
gi\|192912, gi\|109759 - gi\|192912\|gb\|AAA63298.1\| cystatin C, pir\|\|A36163 cystatin C precursor - mouse	152.0	[0..2]	[138..1]
CYTC_RAT - Cystatin-C OS=Rattus norvegicus GN=Cst3 PE=1 SV=2	141.0	[0..2]	[138..1]
gi\|109093125 - gi\|109093125\|ref\|XP_001097284.1\| PREDICTED: cystatin SA [Macaca mulatta]	141.0	[0..28]	[138..28]
CYT_CHICK - Cystatin OS=Gallus gallus PE=1 SV=2	141.0	[0..2]	[136..1]
gi\|539565, gi\|398711 - pir\|\|A47142 cystatin D precursor - human, gi\|398711\|emb\|CAA49838.1\| cystatin D [Homo sapiens]	139.0	[0..2]	[138..1]
gi\|58081 - gi\|58081\|emb\|CAA31253.1\| ompA - cystatin C fusion preprotein (AA -21 to 120) [synthetic construct]	138.0	[0..12]	[138..12]
CYTC_SAISC - Cystatin-C OS=Saimiri sciureus GN=CST3 PE=2 SV=1	137.0	[0..20]	[138..24]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMARLWKTTW FLLAILVALV AFSYQVKRKT FIRVEEVNAL ESSVKETLEY VTEEYNKKSE  60
   61 DLYNFRILRI LKIEKQMTNH MEFHITVEMQ RTTCLKTEKN LCNVQEGELH KQIQCYFSVY 120
  121 VIPWLEVFKM LKKNCTNSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.39794
Match:	1g96A
Description:	Cystatin C
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits