YRC Public Data Repository - Protein Structure Prediction

Protein:	TYOBP_RAT
Organism:	Rattus norvegicus
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TYOBP_RAT.

Description	E-value	Query Range	Subject Range
TYOBP_MOUSE - TYRO protein tyrosine kinase-binding protein OS=Mus musculus GN=Tyrobp PE=1 SV=1	148.0	[0..1]	[114..1]
gi\|14290161, gi\|... - gi\|58014118\|gb\|AAW63060.1\| T cell antigen CD3 epsilon chain [Anas platyrhynchos], gi\|14290161\|gb\|AAK...	136.0	[0..16]	[109..81]
gi\|38158005, gi\|... - gi\|5706450\|emb\|CAB52288.1\| killer activating receptor associated protein, isoform b [Homo sapiens], ...	133.0	[0..1]	[114..1]
gi\|75911547 - gi\|75911547\|gb\|ABA29629.1\| CD3 epsilon [Callithrix jacchus]	133.0	[0..8]	[109..84]
TYOBP_BOVIN - TYRO protein tyrosine kinase-binding protein OS=Bos taurus GN=TYROBP PE=3 SV=1	133.0	[0..1]	[114..1]
gi\|58014124 - gi\|58014124\|gb\|AAW63063.1\| T cell antigen CD3 epsilon chain [Cairina moschata]	132.0	[0..16]	[109..77]
gi\|73948444 - gi\|73948444\|ref\|XP_533687.2\| PREDICTED: similar to TYRO protein tyrosine kinase binding protein isof...	132.0	[0..1]	[114..66]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAPEPSWCF LFLPVLLTVG GLSPVQAQSD NYPGCECSSV SPGVLAGIVL GDLVLTLLIA  60
   61 LAVYSLGRLV SRGRGTADGT RKQHMAETES PYQELQGQRP EVYSDLNTQR QYYR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.045757
Match:	1xiwB
Description:	Crystal structure of human CD3-e/d dimer in complex with a UCHT1 single-chain antibody fragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits