YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149060514, gi...
Organism:	Rattus norvegicus
Length:	63 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149060514, gi....

Description	E-value	Query Range	Subject Range
gi\|62901856 - gi\|62901856\|gb\|AAY18879.1\| COX17 [synthetic construct]	94.0	[0..2]	[63..26]
gi\|76608839 - gi\|76608839\|ref\|XP_877771.1\| PREDICTED: similar to COX17 homolog, cytochrome c oxidase assembly prot...	93.0	[0..1]	[63..26]
gi\|55661839, gi\|... - gi\|55661839\|emb\|CAH71087.1\| OTTHUMP00000018371 [Homo sapiens], gi\|119629170\|gb\|EAX08765.1\| hCG202026...	88.0	[0..1]	[63..1]
gi\|114649557 - gi\|114649557\|ref\|XP_001149835.1\| PREDICTED: similar to COX17 [Pan troglodytes]	88.0	[0..1]	[63..1]
COX17_CANLF - Cytochrome c oxidase copper chaperone OS=Canis lupus familiaris GN=COX17 PE=3 SV=3	88.0	[0..1]	[63..1]
COX17_PIG - Cytochrome c oxidase copper chaperone OS=Sus scrofa GN=COX17 PE=1 SV=1	84.0	[0..2]	[63..1]
CX171_ARATH - Cytochrome c oxidase copper chaperone 1 OS=Arabidopsis thaliana GN=COX17-1 PE=2 SV=1	81.0	[0..2]	[63..13]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGLAAASPA PPEAQEKKPL KPCCACPETK KARDACIIEK GEEHCGHLIE AHKECMRALG  60
   61 FKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.69897
Match:	1u96A
Description:	Solution Structure of Yeast Cox17 with Copper Bound
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits