YRC Public Data Repository - Protein Structure Prediction

Protein:	VAMP8_RAT
Organism:	Rattus norvegicus
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VAMP8_RAT.

Description	E-value	Query Range	Subject Range
gi\|113547541, gi... - gi\|215697298\|dbj\|BAG91292.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|115450939\|ref... gi\|125542540 - gi\|125542540\|gb\|EAY88679.1\| hypothetical protein OsI_10154 [Oryza sativa Indica Group]	133.0	[0..1]	[95..121]
gi\|55276718 - gi\|55276718\|gb\|AAV49990.1\| putative synaptobrevin/VAMP [Hordeum vulgare subsp. vulgare]	122.0	[0..1]	[96..113]
VA727_ARATH - Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1	120.0	[0..1]	[97..137]
gi\|111062519 - gi\|111062519\|gb\|EAT83639.1\| hypothetical protein SNOG_08471 [Phaeosphaeria nodorum SN15]	120.0	[0..10]	[100..212]
gi\|29840934 - gi\|29840934\|gb\|AAP05935.1\| SJCHGC01984 protein [Schistosoma japonicum]	115.0	[0..7]	[97..20]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEASGSAGND RVRNLQSEVE GVKNIMTQNV ERILARGENL DHLRNKTEDL EATSEHFKTT  60
   61 SQKVARKFWW KNVKMIVIIC VIVLIILILI ILFATGTIPT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.39794
Match:	1gl2A
Description:	Endobrevin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits