YRC Public Data Repository - Protein Structure Prediction

Protein:	CHMP5_RAT
Organism:	Rattus norvegicus
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHMP5_RAT.

Description	E-value	Query Range	Subject Range
gi\|50736119 - gi\|50736119\|ref\|XP_419052.1\| PREDICTED: similar to HSPC177 [Gallus gallus]	203.0	[0..1]	[219..93]
gi\|74001062 - gi\|74001062\|ref\|XP_544799.2\| PREDICTED: similar to chromatin modifying protein 2B [Canis familiaris]	193.0	[0..1]	[218..581]
gi\|16876827, gi\|... - gi\|20127558\|ref\|NP_057494.2\| chromatin modifying protein 5 [Homo sapiens], gi\|16876827\|gb\|AAH16698.1...	175.0	[0..1]	[219..1]
gi\|109111233, gi... - gi\|109111233\|ref\|XP_001100473.1\| PREDICTED: chromatin modifying protein 5 isoform 3 [Macaca mulatta]... gi\|123999939, gi... - gi\|123999941\|gb\|ABM87479.1\| chromatin modifying protein 5 [synthetic construct], gi\|123999939\|gb\|ABM... CHMP5_PONPY - Charged multivesicular body protein 5 - Pongo pygmaeus (Orangutan) CHMP5_PONAB - Charged multivesicular body protein 5 OS=Pongo abelii GN=CHMP5 PE=2 SV=1 CHMP5 - chromatin modifying protein 5	174.0	[0..1]	[219..1]
gi\|74267886, gi\|... - gi\|77736309\|ref\|NP_001029854.1\| chromatin modifying protein 5 [Bos taurus], gi\|74267886\|gb\|AAI03183....	169.0	[0..1]	[219..1]
CHMP5_XENLA - Charged multivesicular body protein 5 OS=Xenopus laevis GN=chmp5 PE=2 SV=1	162.0	[0..1]	[219..1]
CHMP5_DANRE - Charged multivesicular body protein 5 OS=Danio rerio GN=chmp5 PE=2 SV=1	161.0	[0..1]	[219..1]
CHMP5_XENTR - Charged multivesicular body protein 5 OS=Xenopus tropicalis GN=chmp5 PE=2 SV=1	161.0	[0..1]	[219..1]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRFFGKAKP KAPPPSLTDC IGTVDSRAES IDKKISRLDA ELVKYKDQIK KMREGPAKNM  60
   61 VKQKALRVLK QKRMYEQQRD NLAQQSFNME QANYTIQSLK DTKTTVDAMK LGVKEMKKAY 120
  121 KEVKIDQIED LQDQLEDMME DANEIQEALG RSYGTPELDE DDLEAELDAL GDELLADEDS 180
  181 SYLDEAASAP AIPEGVPTDT KNKDGVLVDE FGLPQIPAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.0
Match:	2gd5A
Description:	No description for 2gd5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits