YRC Public Data Repository - Protein Structure Prediction

Protein:	ARRC_RAT
Organism:	Rattus norvegicus
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARRC_RAT.

Description	E-value	Query Range	Subject Range
ARRB1_MOUSE - Beta-arrestin-1 OS=Mus musculus GN=Arrb1 PE=1 SV=1 gi\|117616132 - gi\|117616132\|gb\|ABK42084.1\| arrestin 2 [synthetic construct]	155.0	[0..1]	[91..293]
ARRB1_RAT - Beta-arrestin-1 OS=Rattus norvegicus GN=Arrb1 PE=1 SV=1	155.0	[0..1]	[91..293]
gi\|422762, gi\|34... - pir\|\|B46682 beta-arrestin 1, splice form A - human, gi\|385886\|gb\|AAB26522.1\| beta-arrestin 1A {alte...	155.0	[0..1]	[91..293]
gi\|114639375 - gi\|114639375\|ref\|XP_508643.2\| PREDICTED: arrestin beta 1 [Pan troglodytes]	154.0	[0..1]	[91..293]
ARRB1_BOVIN - Beta-arrestin-1 OS=Bos taurus GN=ARRB1 PE=1 SV=1	154.0	[0..1]	[91..293]
gi\|73987952 - gi\|73987952\|ref\|XP_850043.1\| PREDICTED: similar to arrestin beta 1 isoform A isoform 2 [Canis famili...	153.0	[0..1]	[90..288]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKHEDTNLAS STILRPGMNK ELLGILVSYK VKVNLMVSYG GILGGLPASD VGVELPLILI  60
   61 HPKPPHGERA VATSSEDIVV EEFTQQNSQT QS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.09691
Match:	1jsyA
Description:	Arrestin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits