YRC Public Data Repository - Protein Structure Prediction

Protein:	RALA_RAT
Organism:	Rattus norvegicus
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RALA_RAT.

Description	E-value	Query Range	Subject Range
gi\|37360618 - gi\|37360618\|dbj\|BAC98287.1\| mKIAA3012 protein [Mus musculus]	218.0	[0..1]	[204..49]
CRE16067, FL81_1... - RP15185 WBGene00061078 locus:Cre-rab-1 status:Confirmed, null gi\|157761211 - gi\|157761211\|ref\|XP_001672948.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae AF16] gi\|39588485, gi\|... - gi\|39588485\|emb\|CAE58008.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae], gi\|187038224\|em...	217.0	[0..1]	[204..1]
rab-1 - RAS-related protein status:Confirmed UniProt:Q9UAQ6 protein_id:AAC69218.1	217.0	[0..1]	[204..1]
gi\|61365844, gi\|... - gi\|61365844\|gb\|AAX42772.1\| RAB1A member RAS oncogene family [synthetic construct], gi\|54695924\|gb\|AA...	217.0	[0..1]	[205..1]
gi\|148230336, gi... - gi\|27924279\|gb\|AAH45014.1\| Rab1-prov protein [Xenopus laevis], gi\|148230336\|ref\|NP_001080138.1\| RAB1... gi\|52345478, gi\|... - gi\|52345478\|ref\|NP_001004787.1\| RAB1A, member RAS oncogene family [Xenopus (Silurana) tropicalis], g...	217.0	[0..1]	[204..1]
gi\|1370166 - gi\|1370166\|emb\|CAA98160.1\| RAB1C [Lotus japonicus]	216.0	[0..8]	[204..2]
gi\|68371244 - gi\|68371244\|ref\|XP_709240.1\| PREDICTED: similar to RAB1A, member RAS oncogene family isoform 2 [Dani...	216.0	[0..1]	[204..1]
gi\|303734, gi\|738942 - gi\|738942\|prf\|\|2001457K GTP-binding protein, gi\|303734\|dbj\|BAA02118.1\| GTP-binding protein [Pisum sa... gi\|1098293, gi\|4... - pir\|\|S41430 GTP-binding protein, ras-like (clone vfa-ypt1) - fava bean, gi\|452359\|emb\|CAA82707.1\| g...	216.0	[0..8]	[204..2]
gi\|53733986 - gb\|AAH83951.1\| Unknown (protein for MGC:97957) [Xenopus laevis] gi\|55741705 - ref\|NP_001003153.1\| RAB1A, member RAS oncogene family [Canis familiaris] gi\|120419448, gi... - gi\|76629653\|ref\|XP_869337.1\| PREDICTED: similar to RAB1, member RAS oncogene family isoform 2 [Bos t... gi\|109103156 - gi\|109103156\|ref\|XP_001090072.1\| PREDICTED: similar to RAB1, member RAS oncogene family isoform 4 [M... gi\|61355917, gi\|... - gi\|61355926\|gb\|AAX41191.1\| RAB1A member RAS oncogene family [synthetic construct], gi\|61355917\|gb\|AA... tr\|G1TCS8\|G1TCS8... - pep:novel chromosome:oryCun2:2:121177308:121212010:1 gene:ENSOCUG00000017003 transcript:ENSOCUT00000... RAB1A - RAB1A, member RAS oncogene family RAB1A_RAT - Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3 RAB1A_CANLF - Ras-related protein Rab-1A OS=Canis lupus familiaris GN=RAB1A PE=1 SV=3 gi\|159906367 - gi\|159906367\|gb\|ABX10872.1\| RAB1A [Capra hircus] RAB1A_MOUSE - Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3 tr\|M3VYP9\|M3VYP9... - RAB1A, member RAS oncogene family OS=Felis catus GN=RAB1A PE=4 SV=1 gi\|149727528 - gi\|149727528\|ref\|XP_001493347.1\| PREDICTED: similar to RAB1A, member RAS oncogene family [Equus caba...	216.0	[0..1]	[204..1]
RAB1_DIPOM - Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1	216.0	[0..8]	[204..2]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAANKPKGQN SLALHKVIMV GSGGVGKSAL TLQFMYDEFV EDYEPTKADS YRKKVVLDGE  60
   61 EVQIDILDTA GQEDYAAIRD NYFRSGEGFL CVFSITEMES FAATADFREQ ILRVKEDENV 120
  121 PFLLVGNKSD LEDKRQVSVE EAKNRADQWN VNYVETSAKT RANVDKVFFD LMREIRARKM 180
  181 EDSKEKNGKK KRKSLAKRIR ERCCIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.0
Match:	2bovA
Description:	Molecular recognition of an ADP-ribosylating Clostridium botulinum C3 exoenzyme by RalA GTPase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits