YRC Public Data Repository - Protein Structure Prediction

Protein:	KCNE2_RAT
Organism:	Rattus norvegicus
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KCNE2_RAT.

Description	E-value	Query Range	Subject Range
gi\|74001416 - gi\|74001416\|ref\|XP_544867.2\| PREDICTED: similar to potassium voltage-gated channel, Isk-related fami...	199.0	[0..1]	[123..1]
gi\|60831478 - gi\|60831478\|gb\|AAX36972.1\| potassium voltage-gated channel Isk-related family member 2 [synthetic co...	199.0	[0..1]	[123..1]
gi\|114683984, gi... - gi\|114683984\|ref\|XP_001167300.1\| PREDICTED: similar to minK-related peptide 1; MiRP1 isoform 2 [Pan ...	199.0	[0..1]	[123..1]
KCNE2 - potassium voltage-gated channel, Isk-related family, member 2	199.0	[0..1]	[123..1]
gi\|148671844, gi... - gi\|19882205\|ref\|NP_598871.1\| potassium voltage-gated channel, Isk-related subfamily, gene 2 [Mus mus...	198.0	[0..1]	[123..1]
gi\|109065428, gi... - gi\|109065430\|ref\|XP_001089749.1\| PREDICTED: similar to potassium voltage-gated channel, Isk-related ...	198.0	[0..1]	[123..1]
gi\|84201667, gi\|... - gi\|84201667\|gb\|AAI11663.1\| Potassium voltage-gated channel, Isk-related family, member 2 [Bos taurus...	192.0	[0..1]	[123..1]
gi\|50730043 - gi\|50730043\|ref\|XP_425549.1\| PREDICTED: similar to potassium voltage-gated channel, Isk-related fami...	172.0	[0..1]	[107..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLANLTQT LEDAFKKVFI TYMDSWRRNT TAEQQALQAR VDAENFYYVI LYLMVMIGMF  60
   61 AFIVVAILVS TVKSKRREHS QDPYHQYIVE DWQQKYRSQI LHLEDSKATI HENLGATGFT 120
  121 VSP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.865	a.133.1	Phospholipase A2, PLA2

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits