YRC Public Data Repository - Protein Structure Prediction

Protein:	CBY1_RAT
Organism:	Rattus norvegicus
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CBY1_RAT.

Description	E-value	Query Range	Subject Range
CBY1_MOUSE - Protein chibby homolog 1 OS=Mus musculus GN=Cby1 PE=1 SV=1	187.0	[0..1]	[127..1]
CBY1_BOVIN - Protein chibby homolog 1 OS=Bos taurus GN=CBY1 PE=2 SV=1	182.0	[0..1]	[127..1]
gi\|47938686 - gi\|47938686\|gb\|AAH72188.1\| Unknown (protein for MGC:80359) [Xenopus laevis]	180.0	[0..1]	[127..1]
gi\|213627583, gi... - gi\|68421704\|ref\|XP_695170.1\| PREDICTED: similar to leucine-rich protein isoform 2 [Danio rerio], gi\|...	177.0	[0..1]	[127..1]
gi\|18028488 - gi\|18028488\|gb\|AAL56062.1\| cytosolic leucine-rich protein [Homo sapiens]	177.0	[0..1]	[126..1]
gi\|213624050, gi... - gi\|62858941\|ref\|NP_001016253.1\| chibby homolog 1 [Xenopus (Silurana) tropicalis], gi\|213627007\|gb\|AA...	176.0	[0..1]	[127..1]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLFGSIFSP KKTPPRKSAS LSNLHSLDRS TRELELGLDY GTPTMNLAGQ SLKFENGQWV  60
   61 ADSVISGGVD RRETQRLRKR NQQLEEENNL LRLKVDILLD MLSETTAESH LKDKELDELK 120
  121 ITNRRRK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits