YRC Public Data Repository - Protein Structure Prediction

Protein:	MLP3B_RAT
Organism:	Rattus norvegicus
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MLP3B_RAT.

Description	E-value	Query Range	Subject Range
gi\|109019825 - gi\|109019825\|ref\|XP_001093103.1\| PREDICTED: similar to microtubule-associated protein 1 light chain ...	196.0	[0..1]	[141..7]
gi\|114573436 - gi\|114573436\|ref\|XP_514305.2\| PREDICTED: microtubule-associated protein 1 light chain 3 gamma [Pan t...	190.0	[0..1]	[141..7]
MAP1LC3C - microtubule-associated protein 1 light chain 3 gamma	189.0	[0..1]	[141..7]
gi\|25989541 - gi\|25989541\|gb\|AAM77034.1\| polyprotein [Bovine viral diarrhea virus-1]	187.0	[0..3]	[121..185]
gi\|42552154, gi\|... - gi\|46138451\|ref\|XP_390916.1\| hypothetical protein FG10740.1 [Gibberella zeae PH-1], gi\|42552154\|gb\|E...	187.0	[0..1]	[135..67]
gi\|50758585 - gi\|50758585\|ref\|XP_417327.1\| PREDICTED: similar to Zgc:77094 [Gallus gallus]	186.0	[0..1]	[120..71]
MLP3B_BOVIN - Microtubule-associated proteins 1A/1B light chain 3B OS=Bos taurus GN=MAP1LC3B PE=1 SV=4 tr\|D7RA29\|D7RA29_PIG - Microtubule-associated protein 1 light chain 3 beta OS=Sus scrofa GN=MAP1LC3B PE=2 SV=1	184.0	[0..1]	[125..1]

Back

Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSEKTFKQR RSFEQRVEDV RLIREQHPTK IPVIIERYKG EKQLPVLDKT KFLVPDHVNM  60
   61 SELIKIIRRR LQLNANQAFF LLVNGHSMVS VSTPISEVYE SERDEDGFLY MVYASQETFG 120
  121 TALAVTYMSA LKATATGREP CL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	2z0eB
Description:	No description for 2z0eB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits