YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149025217, gi...
Organism:	Rattus norvegicus
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149025217, gi....

Description	E-value	Query Range	Subject Range
gi\|73964320 - gi\|73964320\|ref\|XP_854777.1\| PREDICTED: similar to Probable ergosterol biosynthetic protein 28 [Cani...	230.0	[0..1]	[140..254]
gi\|6841226 - gi\|6841226\|gb\|AAF28966.1\|AF161406_1 HSPC288 [Homo sapiens]	214.0	[0..1]	[140..38]
gi\|78369372, gi\|... - gi\|78369372\|ref\|NP_001030500.1\| hypothetical protein LOC539248 [Bos taurus], gi\|74354117\|gb\|AAI02608...	199.0	[0..1]	[140..1]
gi\|49256361, gi\|... - gi\|49256361\|gb\|AAH74459.1\| MGC84746 protein [Xenopus laevis], gi\|148223207\|ref\|NP_001086305.1\| MGC84...	181.0	[0..1]	[140..1]
gi\|47230208 - gi\|47230208\|emb\|CAG10622.1\| unnamed protein product [Tetraodon nigroviridis]	179.0	[0..1]	[140..1]
gi\|68431759 - gi\|68431759\|ref\|XP_693522.1\| PREDICTED: similar to Probable ergosterol biosynthetic protein 28 [Dani...	179.0	[0..1]	[140..1]
gi\|89272022 - gi\|89272022\|emb\|CAJ83170.1\| Novel protein orthologous to C14orf1 (Human) [Xenopus tropicalis]	178.0	[0..1]	[140..28]

Back

Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRFLNVLRS WLVMVSIIAM GNTLQSFRDH TFLYEKLYTG KPNLVNGLQA RTFGIWTLLS  60
   61 SVIRCLCAID IHNKTLYHIT LWTFLLALGH FLSELFVFGT AAPTVGVLAP LMVASFSILG 120
  121 MLVGLRYLEA EPVSRQKKRN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	76.060481
Match:	PF03694.4
Description:	No description for PF03694.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits