YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|109469105, gi...
Organism:	Rattus norvegicus
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109469105, gi....

Description	E-value	Query Range	Subject Range
MGR2_YEAST - Protein MGR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MGR2 PE=1 SV=1 MGR2 - Protein required for growth of cells lacking the mitochondrial genome	5.0E-25	[1..78]	[1..78]
gi\|44981111 - gi\|44981111\|gb\|AAS50963.1\| ABR191Cp [Ashbya gossypii ATCC 10895] gi\|44981111, gi\|... - gi\|45185422\|ref\|NP_983139.1\| ABR191Cp [Ashbya gossypii ATCC 10895], gi\|44981111\|gb\|AAS50963.1\| ABR19...	9.0E-25	[2..78]	[3..79]
gi\|50310063, gi\|... - gi\|50310063\|ref\|XP_455045.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644180\|emb\|CAH0013... gi\|49644180 - gi\|49644180\|emb\|CAH00132.1\| KLLA0E24289p [Kluyveromyces lactis]	4.0E-24	[1..78]	[1..79]
gi\|49526357 - gi\|49526357\|emb\|CAG59981.1\| unnamed protein product [Candida glabrata] gi\|50289235, gi\|... - gi\|50289235\|ref\|XP_447048.1\| unnamed protein product [Candida glabrata], gi\|49526357\|emb\|CAG59981.1\|...	4.0E-23	[1..78]	[1..78]
gi\|46440715, gi\|... - gi\|68474051\|ref\|XP_718922.1\| hypothetical protein CaO19.13483 [Candida albicans SC5314], gi\|68473842... orf19.13483, orf... - orf19.6062 CGDID:CAL0005161 Assembly 19, Contig19-10237 (126026, 125706) CDS, reverse complemented, ... gi\|238879452 - gi\|238879452\|gb\|EEQ43090.1\| hypothetical protein CAWG_01327 [Candida albicans WO-1]	1.0E-21	[2..78]	[3..79]
gi\|67536926, gi\|... - gi\|67536926\|ref\|XP_662237.1\| hypothetical protein AN4633.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	3.0E-20	[1..78]	[1..78]
gi\|50557122, gi\|... - gi\|50557122\|ref\|XP_505969.1\| YALI0F27929p [Yarrowia lipolytica], gi\|49651839\|emb\|CAG78781.1\| unnamed... gi\|49651839 - gi\|49651839\|emb\|CAG78781.1\| YALI0F27929p [Yarrowia lipolytica]	5.0E-20	[1..78]	[1..80]
gi\|83774897 - gi\|83774897\|dbj\|BAE65020.1\| unnamed protein product [Aspergillus oryzae] gi\|169783382 - gi\|169783382\|ref\|XP_001826153.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238493169, gi... - gi\|238493169\|ref\|XP_002377821.1\| mitochondrial genome maintenance protein Mgr2, putative [Aspergillu...	1.0E-19	[1..78]	[1..78]
gi\|70989057, gi\|... - gi\|70989057\|ref\|XP_749378.1\| mitochondrial genome maintenance protein Mgr2 [Aspergillus fumigatus Af... gi\|159128792 - gi\|159128792\|gb\|EDP53906.1\| mitochondrial genome maintenance protein Mgr2, putative [Aspergillus fum... gi\|119498101, gi... - gi\|119498101\|ref\|XP_001265808.1\| mitochondrial genome maintenance protein Mgr2, putative [Neosartory...	2.0E-19	[1..78]	[1..78]
gi\|28925844, gi\|... - gi\|32408451\|ref\|XP_324707.1\| predicted protein [Neurospora crassa], gi\|28925844\|gb\|EAA34843.1\| predi... gi\|85111737 - gi\|85111737\|ref\|XP_964079.1\| hypothetical protein [Neurospora crassa OR74A]	3.0E-19	[1..78]	[1..92]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVAVGPYGQ SQPSCFDRVK MGFVMGCAVG MAAGALFGTF SCLRIGMRGR ELMGGIGKTM  60
   61 MQSGGTFGTF MAIGMGIRC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits