YRC Public Data Repository - Protein Structure Prediction

Protein:	RER1_RAT
Organism:	Rattus norvegicus
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RER1_RAT.

Description	E-value	Query Range	Subject Range
gi\|76637598 - gi\|76637598\|ref\|XP_609109.2\| PREDICTED: similar to RER1 homolog [Bos taurus]	359.0	[0..1]	[196..91]
gi\|7688699 - gi\|7688699\|gb\|AAF67490.1\|AF157324_1 RER1 protein [Homo sapiens]	342.0	[0..1]	[192..1]
RER1_PONPY - Protein RER1 - Pongo pygmaeus (Orangutan) gi\|108995760, gi... - gi\|108995760\|ref\|XP_001084959.1\| PREDICTED: RER1 retention in endoplasmic reticulum 1 homolog (S. ce... RER1 - RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae) gi\|60655621 - gi\|60655621\|gb\|AAX32374.1\| RER1-like [synthetic construct] RER1_PONAB - Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1	339.0	[0..1]	[196..1]
gi\|30585315, gi\|... - gi\|61373046\|gb\|AAX43964.1\| RER1-like [synthetic construct], gi\|61373041\|gb\|AAX43963.1\| RER1-like [sy...	339.0	[0..1]	[196..1]
RER1_CHICK - Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1	337.0	[0..1]	[196..1]
gi\|47220416 - gi\|47220416\|emb\|CAG03196.1\| unnamed protein product [Tetraodon nigroviridis]	331.0	[0..1]	[192..1]
gi\|37194662, gi\|... - gi\|41053411\|ref\|NP_956969.1\| RER1 retention in endoplasmic reticulum 1 homolog [Danio rerio], gi\|376...	330.0	[0..1]	[196..1]
gi\|148222900, gi... - gi\|50417546\|gb\|AAH77533.1\| MGC83321 protein [Xenopus laevis], gi\|148222900\|ref\|NP_001086840.1\| MGC83...	322.0	[0..1]	[196..1]
gi\|58332778, gi\|... - gi\|89267870\|emb\|CAJ82728.1\| retention in endoplasmic reticulum protein 1 [Xenopus tropicalis], gi\|58...	322.0	[0..1]	[196..1]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEGDSVGDS VHGKPSVVYR FFSRLGQIYQ SWLDKSTPYT AVRWVVTLGL SFVYMIRVYL  60
   61 LQGWYIVTYA LGIYHLNLFI AFLSPKVDPS LMEDSDDGPS LPTKQNEEFR PFIRRLPEFK 120
  121 FWHAATKGIL VAMICTFFEA FNVPVFWPIL VMYFIMLFCI TMKRQIKHMI KYRYIPFTHG 180
  181 KRRYKGKEDV GKTFAS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	149.173925
Match:	PF03248.4
Description:	No description for PF03248.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits