YRC Public Data Repository - Protein Structure Prediction

Protein:	PP14D_RAT
Organism:	Rattus norvegicus
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PP14D_RAT.

Description	E-value	Query Range	Subject Range
gi\|109730881, gi... - gi\|148682450\|gb\|EDL14397.1\| mCG7896 [Mus musculus], gi\|145587107\|ref\|NP_080022.2\| hypothetical prote...	187.0	[0..1]	[146..1]
gi\|114656413 - gi\|114656413\|ref\|XP_001146790.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] CCDS10066.1_1 - null PPP1R14D - protein phosphatase 1, regulatory (inhibitor) subunit 14D	187.0	[0..1]	[146..1]
gi\|76627550 - gi\|76627550\|ref\|XP_875067.1\| PREDICTED: similar to Protein phosphatase 1 regulatory subunit 14D (Gas...	186.0	[0..1]	[146..199]
gi\|51980674, gi\|... - gi\|62078641\|ref\|NP_001013978.1\| hypothetical protein LOC301306 [Rattus norvegicus], gi\|51980674\|gb\|A...	178.0	[0..1]	[146..1]
gi\|61370248, gi\|... - gi\|61370248\|gb\|AAX43462.1\| LIM domain kinase 2 [synthetic construct], gi\|61370243\|gb\|AAX43461.1\| LIM...	176.0	[0..6]	[146..559]
gi\|47227454 - gi\|47227454\|emb\|CAG04602.1\| unnamed protein product [Tetraodon nigroviridis]	164.0	[0..7]	[146..2]
gi\|50742540 - gi\|50742540\|ref\|XP_419669.1\| PREDICTED: similar to protein phosphatase 1, regulatory (inhibitor) sub...	164.0	[0..20]	[146..463]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSSSAASCT SPNPDTDNPD KKVRWSSEKR RRASSTDSES KTHLDISKLP RSRRPSRLTV  60
   61 KYDRGHLQRW LEMEQWVDAQ VQELFQGQAD TSEPEIDLEA LMELSTDEQR TQLEAILQDC 120
  121 PGNREPFISE LLSQLKRLRR LSRPSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.045757
Match:	1j2mA
Description:	Myosin phosphatase inhibitor 17kDa protein, CPI-17
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits