YRC Public Data Repository - Protein Structure Prediction

Protein:	PP14B_RAT
Organism:	Rattus norvegicus
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PP14B_RAT.

Description	E-value	Query Range	Subject Range
gi\|109730881, gi... - gi\|148682450\|gb\|EDL14397.1\| mCG7896 [Mus musculus], gi\|145587107\|ref\|NP_080022.2\| hypothetical prote...	216.0	[0..1]	[146..1]
gi\|51980674, gi\|... - gi\|62078641\|ref\|NP_001013978.1\| hypothetical protein LOC301306 [Rattus norvegicus], gi\|51980674\|gb\|A...	207.0	[0..1]	[146..1]
gi\|73390140, gi\|... - gi\|73390140\|ref\|NP_001026971.1\| LIM domain kinase 2 isoform 1 [Homo sapiens], gi\|15341774\|gb\|AAH1305...	201.0	[0..30]	[147..569]
gi\|61370248, gi\|... - gi\|61370248\|gb\|AAX43462.1\| LIM domain kinase 2 [synthetic construct], gi\|61370243\|gb\|AAX43461.1\| LIM...	201.0	[0..30]	[147..569]
gi\|47227454 - gi\|47227454\|emb\|CAG04602.1\| unnamed protein product [Tetraodon nigroviridis]	188.0	[0..10]	[147..2]
gi\|50742540 - gi\|50742540\|ref\|XP_419669.1\| PREDICTED: similar to protein phosphatase 1, regulatory (inhibitor) sub...	185.0	[0..6]	[147..432]
PP14B_PIG - Protein phosphatase 1 regulatory subunit 14B OS=Sus scrofa GN=PPP1R14B PE=2 SV=1	184.0	[0..27]	[147..27]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSGPAGGA ALAAPAPGPG SGSTGPRVYF QSPPGAAGEG PGGADDDGPV RRQGKVTVKY  60
   61 DRKELRKRLN LEEWILEQLT RLYDCQEEEI PELEIDVDEL LDMESDDTRA ARVKELLVDC 120
  121 YKPTEAFISG LLDKIRGMQK LSTPQKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	1j2mA
Description:	Myosin phosphatase inhibitor 17kDa protein, CPI-17
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits