YRC Public Data Repository - Protein Structure Prediction

Protein:	KCNE3_RAT
Organism:	Rattus norvegicus
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KCNE3_RAT.

Description	E-value	Query Range	Subject Range
CCDS8232.1_1 - null KCNE3 - potassium voltage-gated channel, Isk-related family, member 3 gi\|55636675, gi\|... - gi\|55636675\|ref\|XP_522105.1\| PREDICTED: potassium voltage-gated channel, Isk-related family, member ... gi\|123980224 - gi\|123980224\|gb\|ABM81941.1\| potassium voltage-gated channel, Isk-related family, member 3 [synthetic...	162.0	[0..1]	[107..1]
KCNE3_MOUSE - Potassium voltage-gated channel subfamily E member 3 OS=Mus musculus GN=Kcne3 PE=3 SV=1	160.0	[0..1]	[107..1]
gi\|109107909 - gi\|109107909\|ref\|XP_001115704.1\| PREDICTED: similar to potassium voltage-gated channel, Isk-related ...	159.0	[0..1]	[107..1]
gi\|47522996, gi\|... - gi\|47522996\|ref\|NP_999258.1\| potassium voltage-gated channel, Isk-related family, member 3 [Sus scro...	152.0	[0..1]	[107..1]
gi\|57102546 - gi\|57102546\|ref\|XP_542315.1\| PREDICTED: similar to potassium voltage-gated channel, Isk-related fami...	151.0	[0..1]	[107..1]
gi\|61864955 - gi\|61864955\|ref\|XP_606161.1\| PREDICTED: similar to KCNE3 [Bos taurus]	149.0	[0..1]	[107..1]
gi\|50731409 - gi\|50731409\|ref\|XP_425664.1\| PREDICTED: similar to KCNE3 [Gallus gallus]	131.0	[0..1]	[107..36]
KCNE1_RABIT - Potassium voltage-gated channel subfamily E member 1 OS=Oryctolagus cuniculus GN=KCNE1 PE=3 SV=1	121.0	[0..18]	[101..1]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METSNGTETW YKSLHAVLKA LNTTLHSHLL CRPGPGPGSG TGPDNQTEDH RASLPGRNDN  60
   61 SYMYILFVMF LFAVTVGSLI LGYTRSRKVD KRSDPYHVYI KNRVSMI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.402	a.60.10	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
View	Download	0.402	a.60.10	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
View	Download	0.318	d.74.3	RBP11-like subunits of RNA polymerase
View	Download	0.288	a.280.1	Description not found.
View	Download	0.287	a.4.1	Homeodomain-like
View	Download	0.274	a.29.16	Description not found.
View	Download	0.274	d.33.1	Bacterial protein-export protein SecB
View	Download	0.227	a.151.1	Glutamyl tRNA-reductase dimerization domain
View	Download	0.222	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits