YRC Public Data Repository - Protein Structure Prediction

Protein:	FKB1A_RAT
Organism:	Rattus norvegicus
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FKB1A_RAT.

Description	E-value	Query Range	Subject Range
gi\|118649112, gi... - gi\|118713573\|ref\|ZP_01566138.1\| Peptidylprolyl isomerase [Burkholderia cenocepacia MC0-3], gi\|118649... gi\|67656803, gi\|... - gi\|67656803\|ref\|ZP_00454184.1\| Peptidylprolyl isomerase [Burkholderia cenocepacia AU 1054], gi\|67095... gi\|67667692, gi\|... - gi\|67667692\|ref\|ZP_00464906.1\| Peptidylprolyl isomerase [Burkholderia cenocepacia HI2424], gi\|670987...	166.0	[0..2]	[107..115]
gi\|116073364, gi... - gi\|116073364\|ref\|ZP_01470626.1\| FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase) [Synechococcu...	161.0	[0..2]	[108..100]
gi\|87125507, gi\|... - gi\|87125507\|ref\|ZP_01081352.1\| Peptidylprolyl isomerase [Synechococcus sp. RS9917], gi\|86166807\|gb\|E...	161.0	[0..2]	[108..110]
gi\|88787084, gi\|... - gi\|88809142\|ref\|ZP_01124651.1\| Peptidylprolyl isomerase [Synechococcus sp. WH 7805], gi\|88787084\|gb\|...	160.0	[0..2]	[108..95]
gi\|109092634 - gi\|109092634\|ref\|XP_001108820.1\| PREDICTED: similar to FK506-binding protein 1A [Macaca mulatta]	160.0	[0..1]	[108..74]
gi\|76682873 - gi\|76682873\|ref\|XP_587992.2\| PREDICTED: similar to FKBP1B protein [Bos taurus]	157.0	[0..1]	[108..59]
gi\|56751758, gi\|... - gi\|56751758\|ref\|YP_172459.1\| FKBP-type peptidyl-prolyl cis-trans isomerase [Synechococcus elongatus ... gi\|81301163, gi\|... - gi\|81301163\|ref\|YP_401371.1\| peptidylprolyl isomerase [Synechococcus elongatus PCC 7942], gi\|8117004...	157.0	[0..2]	[107..68]
gi\|113882275, gi... - gi\|113954924\|ref\|YP_729970.1\| FKBP-type peptidyl-prolyl cis-trans isomerase [Synechococcus sp. CC931...	156.0	[0..2]	[108..106]

Back

Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVQVETISS GDGRTFPKRG QTCVVHYTGM LEDGKKFDSS RDRNKPFKFT LGKQEVIRGW  60
   61 EEGVAQMSVG QRAKLIISPD YAYGATGHPG IIPPHATLVF DVELLKLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	1fkkA
Description:	ATOMIC STRUCTURE OF FKBP12, AN IMMUNOPHILIN BINDING PROTEIN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits