YRC Public Data Repository - Protein Structure Prediction

Protein:	SRY_RAT
Organism:	Rattus norvegicus
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRY_RAT.

Description	E-value	Query Range	Subject Range
gi\|84105543 - gi\|84105543\|gb\|AAI11529.1\| Sry protein [Mus musculus]	131.0	[0..1]	[121..1]
tr\|O35862\|O35862... - Sex determining protein OS=Mus musculus musculus GN=Sry PE=4 SV=1 gi\|2623369 - gi\|2623369\|gb\|AAC53442.1\| sex determining protein [Mus musculus musculus]	130.0	[0..1]	[121..1]
gi\|2623379 - gi\|2623379\|gb\|AAC53447.1\| sex determining protein [Mus musculus castaneus]	130.0	[0..1]	[121..1]
SRY_MUSSP - Sex-determining region Y protein OS=Mus spretus GN=Sry PE=3 SV=2	129.0	[0..1]	[121..1]
SRY_URSAR - Sex-determining region Y protein OS=Ursus arctos GN=SRY PE=3 SV=2	127.0	[0..2]	[121..51]
SRY_MIRLE - Sex-determining region Y protein OS=Mirounga leonina GN=SRY PE=3 SV=1	126.0	[0..2]	[121..51]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGQVKRPMN AFMVWSRGER HKLAQQNPSM QNSEISKQLG YQWKSLTEAE KRPFFQEAQR  60
   61 LKTLHREKYP NYKYQPHRRV KVPQRSYTLQ REVASTKLYN LLQWDNNLHT IIYGQDWSRA 120
  121 A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.221849
Match:	2gzkA
Description:	No description for 2gzkA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits