YRC Public Data Repository - Protein Structure Prediction

Protein:	SMR1_RAT
Organism:	Rattus norvegicus
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMR1_RAT.

Description	E-value	Query Range	Subject Range
gi\|732922 - gi\|732922\|emb\|CAA54834.1\| SMR1-alpha1 [Rattus norvegicus] gi\|2144042 - gi\|2144042\|pir\|\|I53030 submaxillary protein SMR1 precursor - black rat	240.0	[0..1]	[146..1]
gi\|6981702, gi\|1... - gi\|6981702\|ref\|NP_036816.1\| variable coding sequence A1 [Rattus norvegicus], gi\|693997\|emb\|CAA59355....	237.0	[0..1]	[146..1]
SMR2C_MOUSE - Submaxillary gland androgen-regulated protein 2, isoform gamma OS=Mus musculus GN=Smr2 PE=2 SV=1	170.0	[0..1]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLYLIFGL WILLACFQSG EGVRGPRRQH NPRRQQDPST LPHYLGLQPD PNGGQIGVTI  60
   61 TIPLNLQPPR VLVNLPGFIT GPPLVVQGTT EYQYQWQLTA PDPTPLSNPP TQLHSTEQAN 120
  121 TKTDAKISNT TATTQNSTDI FEGGGK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits