YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP5E_RAT
Organism:	Rattus norvegicus
Length:	51 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP5E_RAT.

Description	E-value	Query Range	Subject Range
gi\|55243554, gi\|... - gi\|58380900\|ref\|XP_310858.2\| ENSANGP00000012584 [Anopheles gambiae str. PEST], gi\|55243554\|gb\|EAA067...	82.0	[0..2]	[49..30]
gi\|50942951, gi\|... - gi\|50942951\|ref\|XP_481003.1\| putative ATP synthase epsilon chain, mitochondrial [Oryza sativa (japon...	79.0	[0..2]	[49..8]
gi\|21068676 - gi\|21068676\|emb\|CAD31844.1\| putative epsilon subunit of mitochondrial F1-ATPase [Cicer arietinum]	78.0	[0..2]	[49..7]
ATP5E_ARATH - ATP synthase subunit epsilon, mitochondrial OS=Arabidopsis thaliana GN=At1g51650 PE=1 SV=3	78.0	[0..2]	[49..7]
ATP5E_IPOBA - ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas PE=1 SV=2	77.0	[0..2]	[49..7]
gi\|187175309, gi... - gi\|89473714\|gb\|ABD72669.1\| unknown [Acyrthosiphon pisum], gi\|187175309\|ref\|NP_001119671.1\| stunted-l...	77.0	[0..2]	[50..1]
gi\|76633021 - gi\|76633021\|ref\|XP_873660.1\| PREDICTED: similar to ATP synthase epsilon chain, mitochondrial [Bos ta...	77.0	[0..1]	[51..142]
ATP5E_MAIZE - ATP synthase subunit epsilon, mitochondrial OS=Zea mays PE=3 SV=1	75.0	[0..2]	[48..8]
gi\|157104383, gi... - gi\|157104383\|ref\|XP_001648383.1\| hypothetical protein AaeL_AAEL004060 [Aedes aegypti], gi\|108880367\|...	75.0	[0..2]	[49..1]

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Predicted Domain #1

Region A:
Residues: [1-51]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAYWRQAGL SYIRFSQICA KAVRDALKTE FKANAEKTSG TSIKTVKIKK E

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits