YRC Public Data Repository - Protein Structure Prediction

Protein:	IPKA_RAT
Organism:	Rattus norvegicus
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IPKA_RAT.

Description	E-value	Query Range	Subject Range
IPKA_CHICK - cAMP-dependent protein kinase inhibitor alpha OS=Gallus gallus GN=PKIA PE=3 SV=3	96.0	[0..1]	[76..1]
IPKG_PIG - cAMP-dependent protein kinase inhibitor gamma OS=Sus scrofa GN=PKIG PE=3 SV=1	94.0	[0..1]	[76..1]
IPKA_BOVIN - cAMP-dependent protein kinase inhibitor alpha OS=Bos taurus GN=PKIA PE=1 SV=3 tr\|M3WSD4\|M3WSD4... - cAMP-dependent protein kinase inhibitor OS=Felis catus GN=PKIA PE=3 SV=1	92.0	[0..1]	[76..1]
gi\|73992487 - gi\|73992487\|ref\|XP_853601.1\| PREDICTED: similar to cAMP-dependent protein kinase inhibitor gamma [Ca...	92.0	[0..1]	[76..1]
CCDS13334.1_1 - null PKIG - protein kinase (cAMP-dependent, catalytic) inhibitor gamma	92.0	[0..1]	[76..1]
gi\|90076928 - gi\|90076928\|dbj\|BAE88144.1\| unnamed protein product [Macaca fascicularis] gi\|109091867, gi... - gi\|109091873\|ref\|XP_001110061.1\| PREDICTED: similar to cAMP-dependent protein kinase inhibitor gamma...	90.0	[0..1]	[76..1]
gi\|530223 - gi\|530223\|gb\|AAA72716.1\| protein kinase inhibitor [synthetic construct]	88.0	[0..2]	[76..3]
IPKG_MOUSE - cAMP-dependent protein kinase inhibitor gamma OS=Mus musculus GN=Pkig PE=1 SV=1 gi\|23306796, gi\|... - gi\|56789440\|gb\|AAH88108.1\| Protein kinase inhibitor, gamma [Rattus norvegicus], gi\|23618889\|ref\|NP_7...	88.0	[0..1]	[76..1]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDVETTYAD FIASGRTGRR NAIHDILVSS ASGNSNELAL KLAGLDINKT EGEDDGQRSS  60
   61 TEQSGEAQGE AAKSES

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	47.657577
Match:	PF02827.7
Description:	No description for PF02827.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits