YRC Public Data Repository - Protein Structure Prediction

Protein:	NULM_RAT, NU4LM_RAT
Organism:	Rattus norvegicus
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NULM_RAT, NU4LM_RAT.

Description	E-value	Query Range	Subject Range
gi\|71658045, gi\|... - gi\|71658045\|ref\|YP_271997.1\| NADH dehydrogenase subunit 4L [Cobitis sinensis], gi\|44887484\|gb\|AAS480...	106.0	[0..1]	[98..1]
gi\|16266812, gi\|... - gi\|16357117\|ref\|NP_443484.1\| NADH dehydrogenase subunit 4L [Ijimaia dofleini], gi\|16266812\|dbj\|BAB70...	106.0	[0..1]	[98..1]
gi\|25057508, gi\|... - gi\|25057508\|ref\|NP_739680.1\| NADH dehydrogenase subunit 4L [Diplacanthopoma brachysoma], gi\|25005560...	105.0	[0..1]	[98..1]
NU4LM_FORLA - NADH-ubiquinone oxidoreductase chain 4L OS=Formosania lacustris GN=MT-ND4L PE=3 SV=1	105.0	[0..1]	[98..1]
gi\|16357046, gi\|... - gi\|16357046\|ref\|NP_443601.1\| NADH dehydrogenase subunit 4L [Beryx splendens], gi\|16267159\|dbj\|BAB702...	105.0	[0..1]	[98..1]
gi\|62184461, gi\|... - gi\|62184461\|ref\|YP_220610.1\| NADH dehydrogenase subunit 4L [Salanx ariakensis], gi\|58430882\|dbj\|BAD8...	104.0	[0..1]	[98..1]
gi\|21585739 - gi\|21585739\|gb\|AAM55521.1\| NADH dehydrogenase subunit 4L [Pimephales notatus]	104.0	[0..1]	[98..1]
gi\|15430504, gi\|... - gi\|15451812\|ref\|NP_203735.1\| NADH dehydrogenase subunit 4L [Engraulis japonicus], gi\|15430504\|dbj\|BA...	104.0	[0..1]	[98..1]
gi\|4235582 - gi\|4235582\|gb\|AAD13272.1\| NADH dehydrogenase subunit 4L [Cyprinella gibbsi]	104.0	[0..1]	[98..1]
gi\|25057494, gi\|... - gi\|25057494\|ref\|NP_739667.1\| NADH dehydrogenase subunit 4L [Cataetyx rubrirostris], gi\|25005546\|dbj\|...	104.0	[0..1]	[98..1]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSAFLNLTM AFTLSLLGTF MFRSHLMSTL LCLEGMMLSL FVMTSTSTLN SNSMISMTIP  60
   61 ITILVFAACE AAVGLALLVK ISNTHGTDYV QNLNLLQC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	45.013228
Match:	PF00420.15
Description:	No description for PF00420.15 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.973	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.965	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.949	N/A	N/A	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.947	N/A	N/A	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.944	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain

Predicted functions:

Term	Confidence	Notes
binding	1.60743308647062	bayes_pls_golite062009
protein binding	0.846795222651557	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: