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View Structure Prediction Details

Protein: FGF17_RAT
Organism: Rattus norvegicus
Length: 216 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FGF17_RAT.

Description E-value Query
Range
Subject
Range
gi|213624952, gi... - gi|27462802|gb|AAO15593.1|AF461177_1 fibroblast growth factor-8b [Xenopus laevis], gi|213626476|gb|A...
240.0 [0..10] [215..9]
gi|51949976, gi|... - gi|56118518|ref|NP_001008163.1| fibroblast growth factor 8 (androgen-induced) [Xenopus (Silurana) tr...
240.0 [0..10] [215..9]
gi|12024873 - gi|12024873|gb|AAG45674.1|AF190448_1 fibroblast growth factor 8 [Ambystoma mexicanum]
239.0 [0..1] [215..1]
gi|67845232 - gi|67845232|emb|CAG28796.1| fibroblast growth factor 8 [Gallus gallus]
238.0 [0..11] [215..10]
FGF8A_DANRE - Fibroblast growth factor 8 OS=Danio rerio GN=fgf8a PE=2 SV=1
225.0 [0..5] [215..2]

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Predicted Domain #1
Region A:
Residues: [1-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAARLLPNL TLCLQLLILC CQTQGENHPS PNFNQYVRDQ GAMTDQLSRR QIREYQLYSR  60
   61 TSGKHVQVTG RRISATAEDG NKFAKLIVET DTFGSRVRIK GAESEKYICM NKRGKLIGKP 120
  121 SGKSKDCVFT EIVLENNYTA FQNARHEGWF MAFTRQGRPR QASRSRQNQR EAHFIKRLYQ 180
  181 GQLPFPNHAE RQKQFEFVGS APTRRTKRTR RPQSQT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.69897
Match: 2fdbM
Description: Crystal Structure of Fibroblast growth factor (FGF)8b in complex with FGF Receptor (FGFR) 2c
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle