YRC Public Data Repository - Protein Structure Prediction

Protein:	BIRC5_RAT
Organism:	Rattus norvegicus
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BIRC5_RAT.

Description	E-value	Query Range	Subject Range
gi\|67969107 - gi\|67969107\|dbj\|BAE00908.1\| unnamed protein product [Macaca fascicularis]	168.0	[0..1]	[140..1]
BIRC5_MOUSE - Baculoviral IAP repeat-containing protein 5 OS=Mus musculus GN=Birc5 PE=1 SV=1	166.0	[0..1]	[140..1]
gi\|74008913 - gi\|74008913\|ref\|XP_538165.2\| PREDICTED: similar to Baculoviral IAP repeat-containing protein 4 (Inhi...	166.0	[0..1]	[139..267]
BIRC5_FELCA - Baculoviral IAP repeat-containing protein 5 OS=Felis catus GN=BIRC5 PE=2 SV=1	165.0	[0..1]	[141..1]
BIRC5_PIG - Baculoviral IAP repeat-containing protein 5 OS=Sus scrofa GN=BIRC5 PE=2 SV=1	163.0	[0..1]	[140..1]
gi\|109118487 - gi\|109118487\|ref\|XP_001108164.1\| PREDICTED: similar to baculoviral IAP repeat-containing protein 5 i...	162.0	[0..1]	[140..1]
gi\|114670699, gi... - gi\|114670699\|ref\|XP_001156931.1\| PREDICTED: baculoviral IAP repeat-containing protein 5 isoform 6 [P...	162.0	[0..1]	[140..1]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGATALPPIW QMYLKDHRIY TFKNWPFLED CSCTPERMAE AGFIHCPTEN EPDLAQCFFC  60
   61 FKELEGWEPD DNPIEEHRKH SPGCAFLTVK KQVEELTVSE FLKLDKQRAK NKIAKETNNK 120
  121 QKEFEETRRT VRQSIEQLAA LR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.0
Match:	1m4mA
Description:	Anti-apoptotic protein survivin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits