YRC Public Data Repository - Protein Structure Prediction

Protein:	PROK1_RAT
Organism:	Rattus norvegicus
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PROK1_RAT.

Description	E-value	Query Range	Subject Range
gi\|109013433 - gi\|109013433\|ref\|XP_001101188.1\| PREDICTED: similar to prokineticin 1 [Macaca mulatta]	178.0	[0..1]	[105..1]
gi\|19263965 - gi\|19263965\|gb\|AAH25399.1\| Prokineticin 1 [Homo sapiens] gi\|123981334, gi... - gi\|123996175\|gb\|ABM85689.1\| prokineticin 1 [synthetic construct], gi\|123981334\|gb\|ABM82496.1\| prokin...	176.0	[0..1]	[105..1]
PROK1_MOUSE - Prokineticin-1 OS=Mus musculus GN=Prok1 PE=1 SV=1	174.0	[0..1]	[105..1]
gi\|73959906 - gi\|73959906\|ref\|XP_547234.2\| PREDICTED: similar to prokineticin 1 [Canis familiaris]	170.0	[0..1]	[104..1]
gi\|50760515 - gi\|50760515\|ref\|XP_425816.1\| PREDICTED: similar to prokineticin 1 [Gallus gallus]	154.0	[0..18]	[105..18]
BM8X_BOMMX - Prokineticin Bv8-like peptide 2 OS=Bombina maxima PE=1 SV=1	148.0	[0..1]	[97..1]
BO8_BOMOR - Prokineticin Bo8 OS=Bombina orientalis PE=1 SV=1	145.0	[0..1]	[97..1]
BV8_BOMVA - Prokineticin Bv8 OS=Bombina variegata PE=1 SV=1	144.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGAVQVFIM LLLATVSDCA VITGACERDV QCGAGTCCAI SLWLRGLRLC TPLGREGEEC  60
   61 HPGSHKIPFF RKRQHHTCPC SPSLLCSRFP DGRYRCSQDL KNVNF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	1imtA
Description:	MAMBA INTESTINAL TOXIN 1, NMR, 39 STRUCTURES
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits