YRC Public Data Repository - Protein Structure Prediction

Protein:	PROK2_RAT
Organism:	Rattus norvegicus
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PROK2_RAT.

Description	E-value	Query Range	Subject Range
gi\|6524951, gi\|8... - gi\|82830395\|ref\|NP_001032628.1\| prokineticin 2 isoform 2 [Mus musculus], gi\|6524951\|gb\|AAF15261.1\|AF...	150.0	[0..1]	[107..1]
gi\|19263965 - gi\|19263965\|gb\|AAH25399.1\| Prokineticin 1 [Homo sapiens] gi\|123981334, gi... - gi\|123996175\|gb\|ABM85689.1\| prokineticin 1 [synthetic construct], gi\|123981334\|gb\|ABM82496.1\| prokin...	145.0	[0..17]	[103..10]
gi\|109013433 - gi\|109013433\|ref\|XP_001101188.1\| PREDICTED: similar to prokineticin 1 [Macaca mulatta]	145.0	[0..17]	[103..10]
PROK1_RAT - Prokineticin-1 OS=Rattus norvegicus GN=Prok1 PE=3 SV=1	144.0	[0..17]	[103..10]
gi\|56117799 - gi\|56117799\|gb\|AAV73830.1\| prokineticin 2 variant 1A/2/4 [Arvicanthis niloticus]	143.0	[0..1]	[107..1]
gi\|73959906 - gi\|73959906\|ref\|XP_547234.2\| PREDICTED: similar to prokineticin 1 [Canis familiaris]	142.0	[0..17]	[105..10]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDPRCAPLL LLLLLPLLLT PPAGDAAVIT GACDKDSQCG GGMCCAVSIW VKSIRICTPM  60
   61 GQVGDSCHPL TRKVPFWGRR MHHTCPCLPG LACLRTSFNR FICLARK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	1imtA
Description:	MAMBA INTESTINAL TOXIN 1, NMR, 39 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
G-protein-coupled receptor binding	1.76850455601094	bayes_pls_golite062009
binding	0.872329021794898	bayes_pls_golite062009
protein binding	0.215913785956355	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: