YRC Public Data Repository - Protein Structure Prediction

Protein:	INSL3_RAT
Organism:	Rattus norvegicus
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for INSL3_RAT.

Description	E-value	Query Range	Subject Range
gi\|7689351 - gi\|7689351\|gb\|AAF67742.1\| relaxin-like protein [Cervus dama]	152.0	[0..5]	[128..10]
gi\|67078442, gi\|... - gi\|94429011\|gb\|ABF18930.1\| insulin-like protein 3 [Ovis aries], gi\|67078442\|ref\|NP_001019909.1\| insu...	152.0	[0..5]	[128..10]
gi\|38607270 - gi\|38607270\|gb\|AAR25542.1\| relaxin-like peptide hormone INSL3 [Capreolus capreolus]	152.0	[0..5]	[128..10]
INSL3 - insulin-like 3 (Leydig cell)	152.0	[0..5]	[128..10]
INSL3_PANTR - Insulin-like 3 OS=Pan troglodytes GN=INSL3 PE=3 SV=1	152.0	[0..5]	[128..10]
INSL3_PIG - Insulin-like 3 OS=Sus scrofa GN=INSL3 PE=2 SV=1 gi\|539728 - pir\|\|A53024 Leydig insulin-like protein precursor - pig	151.0	[0..5]	[128..10]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHALLLLLLL ALGSALRSPQ PPEARAKLCG HHLVRALVRV CGGPRWSPEA TQPVDTRDRE  60
   61 LLQWLEQRHL LHALVADADP ALDPDPALDP QLPHQASQRQ RRSVATNAVH RCCLTGCTQQ 120
  121 DLLGLCPH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.95
Match:	3lriA
Description:	Insulin-like growth factor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits