YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|125564180
Organism:	Oryza sativa Indica Group
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125564180.

Description	E-value	Query Range	Subject Range
gi\|7485503, gi\|4... - pir\|\|T06741 hypothetical protein F15B8.20 - Arabidopsis thaliana, gi\|4678268\|emb\|CAB41176.1\| putativ...	175.0	[0..7]	[112..509]
gi\|9858777 - gi\|9858777\|gb\|AAG01124.1\|AF273333_9 BAC19.9 [Lycopersicon esculentum]	168.0	[0..6]	[115..251]
gi\|159125466 - gi\|159125466\|gb\|EDP50583.1\| conserved hypothetical protein [Aspergillus fumigatus A1163] gi\|66849243, gi\|... - gi\|70993524\|ref\|XP_751609.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668492...	151.0	[0..2]	[107..4]
gi\|220690652, gi... - gi\|238503898\|ref\|XP_002383181.1\| conserved hypothetical protein [Aspergillus flavus NRRL3357], gi\|22... gi\|169764835 - gi\|169764835\|ref\|XP_001816889.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83764743 - gi\|83764743\|dbj\|BAE54887.1\| unnamed protein product [Aspergillus oryzae]	150.0	[0..12]	[107..10]
gi\|115389562, gi... - gi\|115389562\|ref\|XP_001212286.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	149.0	[0..12]	[107..10]
gi\|49092662, gi\|... - gi\|67526395\|ref\|XP_661259.1\| hypothetical protein AN3655.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	148.0	[0..1]	[107..3]
gi\|119184636, gi... - gi\|90301985\|gb\|EAS31616.1\| hypothetical protein CIMG_07095 [Coccidioides immitis RS], gi\|119184636\|r...	143.0	[0..2]	[107..84]
gi\|50947413, gi\|... - gi\|50947413\|ref\|XP_483234.1\| hypothetical protein [Oryza sativa (japonica cultivar-group)], gi\|42408...	128.0	[0..1]	[112..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAISSAAGG MLRARLRGGA RVRGGGGHGE GGGRWTTPGH EEQPKGYLFN RPPPPAGESR  60
   61 KWEDWELPCY VTSFLTVVIL GVGLNAKPDL TLETWAHQKA LERLQQQELA SGEAQAE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.499	a.246.1	Description not found.
View	Download	0.388	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.388	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.365	a.26.1	4-helical cytokines
View	Download	0.365	a.26.1	4-helical cytokines
View	Download	0.357	d.51.1	Eukaryotic type KH-domain (KH-domain type I)
View	Download	0.351	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.351	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.254	a.1.1	Globin-like
View	Download	0.226	a.121.1	Tetracyclin repressor-like, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits